Wall clock time and date at job start Mon Mar 30 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 13 13 C 1.46903 * 110.99807 * 275.00039 * 12 2 1 14 14 H 1.08999 * 115.55249 * 9.42033 * 13 12 2 15 15 C 1.52997 * 117.49831 * 223.74803 * 13 12 2 16 16 C 1.52998 * 117.49771 * 155.08823 * 13 12 2 17 17 H 1.08998 * 117.49892 * 214.97773 * 16 13 12 18 18 C 1.53003 * 117.49914 * 0.02562 * 16 13 12 19 19 C 1.53002 * 117.49703 * 248.74797 * 18 16 13 20 20 C 1.53002 * 117.49960 * 180.08904 * 18 16 13 21 21 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 22 22 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99898 * 151.04719 * 12 2 1 26 26 H 1.08999 * 117.49677 * 0.02562 * 15 13 12 27 27 H 1.08997 * 117.50218 * 144.99512 * 15 13 12 28 28 H 1.09003 * 115.54814 * 34.41463 * 18 16 13 29 29 H 1.08997 * 117.49830 * 359.97438 * 19 18 16 30 30 H 1.09004 * 117.49482 * 145.02072 * 19 18 16 31 31 H 1.08997 * 117.49420 * 214.97706 * 20 18 16 32 32 H 1.09000 * 117.49757 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.6209 1.1984 2.1958 15 6 3.3280 0.1598 3.2332 16 6 1.9951 -0.3913 3.7456 17 1 1.4764 0.1808 4.5148 18 6 1.8496 -1.9114 3.8421 19 6 0.5160 -2.4624 4.3510 20 6 1.7600 -2.5251 5.2408 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7094 1.1619 -3.4844 25 1 2.9174 -1.1205 1.0286 26 1 4.1011 -0.5602 2.9646 27 1 3.6860 1.0943 3.6651 28 1 2.3702 -2.4832 3.0739 29 1 -0.2574 -1.7421 4.6174 30 1 0.1596 -3.3971 3.9179 31 1 2.2214 -3.5008 5.3927 32 1 1.8052 -1.8459 6.0922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307972006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:45 Heat of formation + Delta-G solvation = 42.014768 kcal Electronic energy + Delta-G solvation = -12230.341255 eV Core-core repulsion = 10192.125235 eV Total energy + Delta-G solvation = -2038.216020 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.30934 -35.78019 -33.95480 -31.43718 -27.46037 -25.14587 -23.33452 -22.10756 -21.17118 -20.17031 -18.86039 -16.54558 -15.39331 -15.17763 -14.57255 -13.90275 -13.23041 -13.14348 -12.49693 -11.93972 -11.44246 -11.30498 -11.12249 -10.95766 -10.84289 -10.67990 -10.50157 -10.30799 -10.12111 -10.01687 -9.63748 -9.05050 -8.76711 -8.43298 -7.11050 -6.02385 -4.08990 3.31191 3.35618 3.38356 3.94850 4.39874 4.59286 4.90160 5.07271 5.25614 5.29214 5.31261 5.62654 5.73344 5.75977 5.85926 5.97685 6.13358 6.15822 6.36580 6.43014 6.52009 6.74230 6.91224 7.18806 7.26053 7.54651 7.78445 7.91063 8.27602 8.40907 8.66979 9.01516 9.56852 11.03954 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052155 B = 0.008045 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.735364 B = 3479.660999 C = 3533.261093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.651 5.651 13 C 0.051 3.949 14 H 0.100 0.900 15 C -0.209 4.209 16 C -0.127 4.127 17 H 0.093 0.907 18 C -0.091 4.091 19 C -0.174 4.174 20 C -0.194 4.194 21 H 0.005 0.995 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.332 0.668 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -2.695 10.518 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.281 5.281 13 C -0.061 4.061 14 H 0.118 0.882 15 C -0.248 4.248 16 C -0.147 4.147 17 H 0.111 0.889 18 C -0.109 4.109 19 C -0.211 4.211 20 C -0.231 4.231 21 H 0.024 0.976 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.052 -2.827 10.491 10.916 hybrid contribution 1.029 0.106 -1.005 1.442 sum 2.081 -2.721 9.486 10.086 Atomic orbital electron populations 1.21707 0.97788 0.99359 0.99292 1.19145 0.92657 0.92362 0.85262 0.97957 1.21225 1.31565 1.12556 0.90525 0.92315 1.24909 0.95023 0.94989 0.99016 1.69890 1.36563 1.22839 1.23577 0.86583 0.79059 0.79788 0.82088 1.20202 1.21276 1.20339 1.60434 1.31209 1.31174 1.05281 1.22546 0.98317 0.96255 0.88964 0.88200 1.23464 0.92013 1.02287 1.07072 1.21982 1.00294 0.93454 0.98987 0.88897 1.21450 1.00253 0.93583 0.95602 1.22813 0.91611 1.02698 1.03933 1.22970 1.03307 1.02037 0.94824 0.97633 0.90197 0.95016 0.92857 0.84875 0.89089 0.89624 0.87484 0.89311 0.89169 0.89484 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.44 2.50 -68.86 -0.17 5.26 16 3 H 0.00 0.08 7.74 -51.93 -0.40 -0.33 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.65 -14.01 5.77 -100.95 -0.58 -14.59 16 13 C 0.05 0.95 6.00 -67.71 -0.41 0.55 16 14 H 0.10 1.93 7.77 -51.93 -0.40 1.52 16 15 C -0.21 -3.23 9.95 -26.70 -0.27 -3.50 16 16 C -0.13 -2.00 5.85 -90.58 -0.53 -2.53 16 17 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.09 -1.38 5.41 -90.62 -0.49 -1.87 16 19 C -0.17 -2.44 10.25 -26.69 -0.27 -2.71 16 20 C -0.19 -2.47 10.25 -26.69 -0.27 -2.74 16 21 H 0.00 0.11 8.07 -51.93 -0.42 -0.31 16 22 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.33 7.00 8.01 -39.29 -0.31 6.69 16 26 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.11 1.76 7.88 -51.93 -0.41 1.35 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -27.89 267.79 -8.58 -36.47 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.18 Total: 6.01 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.46 Total: -23.31 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.05 Total: -39.52 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.89 -8.58 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.486 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds