Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 13 13 C 1.46903 * 110.99807 * 275.00039 * 12 2 1 14 14 H 1.08999 * 115.55249 * 9.42033 * 13 12 2 15 15 C 1.52997 * 117.49831 * 223.74803 * 13 12 2 16 16 C 1.52998 * 117.49771 * 155.08823 * 13 12 2 17 17 H 1.08998 * 117.49892 * 214.97773 * 16 13 12 18 18 C 1.53003 * 117.49914 * 0.02562 * 16 13 12 19 19 C 1.53002 * 117.49703 * 248.74797 * 18 16 13 20 20 C 1.53002 * 117.49960 * 180.08904 * 18 16 13 21 21 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 22 22 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99898 * 151.04719 * 12 2 1 26 26 H 1.08999 * 117.49677 * 0.02562 * 15 13 12 27 27 H 1.08997 * 117.50218 * 144.99512 * 15 13 12 28 28 H 1.09003 * 115.54814 * 34.41463 * 18 16 13 29 29 H 1.08997 * 117.49830 * 359.97438 * 19 18 16 30 30 H 1.09004 * 117.49482 * 145.02072 * 19 18 16 31 31 H 1.08997 * 117.49420 * 214.97706 * 20 18 16 32 32 H 1.09000 * 117.49757 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.6209 1.1984 2.1958 15 6 3.3280 0.1598 3.2332 16 6 1.9951 -0.3913 3.7456 17 1 1.4764 0.1808 4.5148 18 6 1.8496 -1.9114 3.8421 19 6 0.5160 -2.4624 4.3510 20 6 1.7600 -2.5251 5.2408 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7094 1.1619 -3.4844 25 1 2.9174 -1.1205 1.0286 26 1 4.1011 -0.5602 2.9646 27 1 3.6860 1.0943 3.6651 28 1 2.3702 -2.4832 3.0739 29 1 -0.2574 -1.7421 4.6174 30 1 0.1596 -3.3971 3.9179 31 1 2.2214 -3.5008 5.3927 32 1 1.8052 -1.8459 6.0922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307972006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 26.170332 kcal Electronic energy + Delta-G solvation = -12231.028321 eV Core-core repulsion = 10192.125235 eV Total energy + Delta-G solvation = -2038.903086 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.64038 -37.27059 -35.65470 -33.37097 -29.34465 -27.27700 -24.53043 -23.21483 -22.65605 -21.92741 -20.25671 -18.51748 -17.06300 -16.49985 -16.25406 -15.55367 -14.95479 -14.44661 -14.34350 -13.49716 -13.20174 -12.84845 -12.74556 -12.61068 -12.32524 -12.24482 -12.16901 -11.96079 -11.93515 -11.57976 -11.01825 -10.87779 -10.54720 -10.19359 -8.79527 -8.13872 -6.28465 1.42003 1.44041 1.51704 2.40894 2.74055 3.14403 3.36996 3.54589 3.74788 4.05433 4.14367 4.39840 4.47021 4.56942 4.60962 4.82434 4.86467 4.88953 4.97843 5.09961 5.11189 5.23033 5.33360 5.35603 5.49839 5.54446 5.68204 5.86306 6.21037 6.49021 6.78797 6.99947 7.42099 8.91789 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052155 B = 0.008045 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.735364 B = 3479.660999 C = 3533.261093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.219 3.781 3 H -0.030 1.030 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.648 5.648 13 C 0.012 3.988 14 H 0.086 0.914 15 C -0.188 4.188 16 C -0.107 4.107 17 H 0.110 0.890 18 C -0.117 4.117 19 C -0.181 4.181 20 C -0.166 4.166 21 H 0.019 0.981 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -3.545 11.657 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.277 5.277 13 C -0.099 4.099 14 H 0.104 0.896 15 C -0.227 4.227 16 C -0.127 4.127 17 H 0.128 0.872 18 C -0.135 4.135 19 C -0.218 4.218 20 C -0.203 4.203 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.751 -3.680 11.658 12.350 hybrid contribution 0.811 0.392 -1.291 1.574 sum 2.561 -3.288 10.367 11.173 Atomic orbital electron populations 1.21517 0.97826 0.98674 0.98807 1.18914 0.92604 0.90754 0.86671 1.01237 1.21570 1.31845 1.12786 0.91689 0.92275 1.25742 0.95116 0.95663 1.02067 1.70021 1.37405 1.24047 1.24286 0.85534 0.78757 0.78622 0.78241 1.19680 1.20832 1.19505 1.60355 1.31288 1.31516 1.04509 1.22548 1.02103 0.95885 0.89404 0.89624 1.23506 0.91382 1.03182 1.04641 1.22032 1.00032 0.93994 0.96603 0.87239 1.21429 1.01591 0.93116 0.97376 1.22888 0.91699 1.02713 1.04528 1.23035 1.01181 1.02581 0.93509 0.96213 0.92491 0.95565 0.92781 0.85000 0.88742 0.87579 0.89171 0.89111 0.89156 0.88055 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 2 C 0.22 11.45 2.50 44.17 0.11 11.56 16 3 H -0.03 -1.73 7.74 -2.39 -0.02 -1.74 16 4 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 5 H 0.06 3.22 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.60 11.32 21.45 0.24 -53.35 16 8 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 N -0.65 -28.14 5.77 -473.31 -2.73 -30.87 16 13 C 0.01 0.44 6.00 44.91 0.27 0.71 16 14 H 0.09 3.36 7.77 -2.39 -0.02 3.34 16 15 C -0.19 -5.46 9.95 30.62 0.30 -5.16 16 16 C -0.11 -3.16 5.85 -10.77 -0.06 -3.22 16 17 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 18 C -0.12 -3.34 5.41 -10.79 -0.06 -3.40 16 19 C -0.18 -4.73 10.25 30.62 0.31 -4.41 16 20 C -0.17 -3.68 10.25 30.62 0.31 -3.37 16 21 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 22 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.33 14.11 8.01 -89.69 -0.72 13.40 16 26 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16 27 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 2.89 7.88 -2.39 -0.02 2.87 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -59.39 267.79 2.43 -56.96 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.37 Total: 22.54 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 2.52 Total: -41.08 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.49 Total: -84.22 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -59.39 2.43 -56.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.134 kcal (2) G-P(sol) polarization free energy of solvation -59.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds