Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 C 1.54632 * 111.03434 * 270.32952 * 14 13 2 16 16 C 1.51166 * 104.69643 * 217.36309 * 15 14 13 17 17 C 1.30527 * 111.11685 * 16.37960 * 16 15 14 18 18 C 1.51108 * 111.10446 * 0.03505 * 17 16 15 19 19 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 20 20 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 23 23 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.00905 * 110.99341 * 38.95202 * 13 2 1 26 26 H 1.09000 * 110.91251 * 34.28953 * 14 13 2 27 27 H 1.09007 * 110.38735 * 336.14869 * 15 14 13 28 28 H 1.09001 * 110.38881 * 98.52145 * 15 14 13 29 29 H 1.07998 * 124.43654 * 196.40945 * 16 15 14 30 30 H 1.07997 * 124.45040 * 180.02562 * 17 16 15 31 31 H 1.09002 * 110.38387 * 224.74783 * 18 17 16 32 32 H 1.08999 * 110.48127 * 102.42126 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 3.4588 0.9232 2.4235 16 6 3.7627 1.0110 3.9017 17 6 3.0002 0.2035 4.5873 18 6 2.0610 -0.5583 3.6813 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6052 -0.2616 -2.1370 23 1 1.7516 -1.7714 -1.2057 24 1 4.0598 -2.2352 -4.0406 25 1 1.4496 -1.4979 1.4099 26 1 1.2737 0.9522 2.3073 27 1 4.2170 0.3275 1.9148 28 1 3.4022 1.9203 1.9868 29 1 4.5122 1.6576 4.3337 30 1 3.0358 0.0941 5.6612 31 1 1.0544 -0.5679 4.0996 32 1 2.4187 -1.5769 3.5310 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379314099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = 5.440742 kcal Electronic energy + Delta-G solvation = -12382.265183 eV Core-core repulsion = 10342.463194 eV Total energy + Delta-G solvation = -2039.801989 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.63303 -35.62834 -32.49551 -30.15595 -27.86645 -27.22196 -26.09432 -22.95559 -19.95984 -19.81875 -18.31215 -16.20811 -15.75852 -15.52011 -14.43161 -13.79275 -13.23729 -12.75152 -12.32244 -12.20903 -11.90475 -11.71881 -11.43478 -11.39783 -10.97899 -10.89997 -10.62027 -10.45632 -10.29996 -9.97419 -9.21547 -8.92031 -8.63898 -8.21503 -7.52858 -5.83576 -3.80644 2.47645 3.40942 3.48209 3.53377 4.60441 4.79311 4.90670 5.03678 5.45052 5.51995 5.53874 5.79640 5.89721 5.93654 5.94321 6.09707 6.16758 6.22456 6.30917 6.43532 6.63314 6.67368 6.79234 7.09419 7.12168 7.63852 7.76135 8.09553 8.12079 8.23935 8.65716 9.25046 9.80388 11.28742 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.010699 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.672916 B = 2616.552886 C = 3249.357879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.655 5.655 14 C 0.083 3.917 15 C -0.094 4.094 16 C -0.158 4.158 17 C -0.178 4.178 18 C -0.101 4.101 19 H 0.036 0.964 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.256 0.744 25 H 0.332 0.668 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 4.048 12.145 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.151 4.151 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.285 5.285 14 C -0.028 4.028 15 C -0.132 4.132 16 C -0.176 4.176 17 C -0.196 4.196 18 C -0.138 4.138 19 H 0.055 0.945 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.065 0.935 25 H 0.150 0.850 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.705 4.033 11.807 12.767 hybrid contribution 0.126 0.113 0.133 0.215 sum -2.579 4.146 11.940 12.900 Atomic orbital electron populations 1.22565 0.99633 1.01155 1.00544 1.21826 0.89773 0.98172 0.92321 0.91807 1.19119 0.96276 0.95368 0.89735 1.21198 0.91921 1.32637 1.06529 0.92240 1.25012 0.97929 0.96041 0.96110 1.69974 1.35037 1.37329 1.12306 0.86594 0.86600 0.77537 0.77581 1.19834 1.21351 1.21479 1.60614 1.57544 1.08206 1.02168 1.22316 0.96168 0.94306 0.89973 1.21478 0.98208 1.00510 0.93023 1.23385 0.98941 0.98859 0.96404 1.23113 0.99134 0.98812 0.98540 1.21516 0.98304 0.99976 0.94048 0.94480 0.92532 0.93039 0.96532 0.96535 0.93459 0.85007 0.93752 0.88675 0.91985 0.86454 0.86509 0.92072 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.15 37.16 0.34 -2.73 16 2 C 0.09 1.81 2.42 -67.71 -0.16 1.64 16 3 H 0.06 1.35 7.86 -51.92 -0.41 0.94 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.76 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 8 N -0.91 -27.77 13.29 55.43 0.74 -27.03 16 9 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.66 -12.35 5.77 -97.95 -0.57 -12.91 16 14 C 0.08 1.33 3.20 -66.00 -0.21 1.12 16 15 C -0.09 -1.55 6.54 -26.80 -0.18 -1.73 16 16 C -0.16 -2.17 10.78 -35.67 -0.38 -2.56 16 17 C -0.18 -2.30 10.78 -35.69 -0.38 -2.69 16 18 C -0.10 -1.39 6.30 -26.83 -0.17 -1.56 16 19 H 0.04 0.56 7.49 -51.93 -0.39 0.17 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.33 5.82 8.20 -39.29 -0.32 5.50 16 26 H 0.04 0.71 7.25 -51.93 -0.38 0.33 16 27 H 0.10 1.82 8.08 -51.93 -0.42 1.40 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -30.14 265.95 -7.78 -37.91 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.26 Total: 1.21 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.68 Total: -20.56 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.17 Total: -39.94 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.14 -7.78 -37.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379314099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.354 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds