Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 C 1.54632 * 111.03434 * 270.32952 * 14 13 2 16 16 C 1.51166 * 104.69643 * 217.36309 * 15 14 13 17 17 C 1.30527 * 111.11685 * 16.37960 * 16 15 14 18 18 C 1.51108 * 111.10446 * 0.03505 * 17 16 15 19 19 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 20 20 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 23 23 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.00905 * 110.99341 * 38.95202 * 13 2 1 26 26 H 1.09000 * 110.91251 * 34.28953 * 14 13 2 27 27 H 1.09007 * 110.38735 * 336.14869 * 15 14 13 28 28 H 1.09001 * 110.38881 * 98.52145 * 15 14 13 29 29 H 1.07998 * 124.43654 * 196.40945 * 16 15 14 30 30 H 1.07997 * 124.45040 * 180.02562 * 17 16 15 31 31 H 1.09002 * 110.38387 * 224.74783 * 18 17 16 32 32 H 1.08999 * 110.48127 * 102.42126 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 3.4588 0.9232 2.4235 16 6 3.7627 1.0110 3.9017 17 6 3.0002 0.2035 4.5873 18 6 2.0610 -0.5583 3.6813 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6052 -0.2616 -2.1370 23 1 1.7516 -1.7714 -1.2057 24 1 4.0598 -2.2352 -4.0406 25 1 1.4496 -1.4979 1.4099 26 1 1.2737 0.9522 2.3073 27 1 4.2170 0.3275 1.9148 28 1 3.4022 1.9203 1.9868 29 1 4.5122 1.6576 4.3337 30 1 3.0358 0.0941 5.6612 31 1 1.0544 -0.5679 4.0996 32 1 2.4187 -1.5769 3.5310 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379314099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = -13.336369 kcal Electronic energy + Delta-G solvation = -12383.079420 eV Core-core repulsion = 10342.463194 eV Total energy + Delta-G solvation = -2040.616225 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.89176 -37.18255 -34.62052 -31.70679 -29.17557 -29.00001 -27.38008 -25.00464 -21.49825 -21.23363 -19.44576 -18.36499 -16.99112 -16.88646 -16.47213 -15.38725 -14.80118 -14.29221 -14.07100 -13.54549 -13.43625 -13.22981 -12.95722 -12.80229 -12.68091 -12.45121 -12.31109 -12.01215 -11.92996 -11.62219 -11.11105 -11.06952 -10.48618 -9.73555 -9.00727 -8.09143 -6.13351 1.40154 1.41084 1.43927 1.54115 2.47467 3.22541 3.41789 3.76049 3.91210 4.22087 4.30375 4.46369 4.47309 4.56943 4.77511 4.87067 4.94337 4.96110 5.05918 5.13996 5.20948 5.24091 5.36689 5.51950 5.66415 5.72447 5.91477 6.09531 6.37092 6.53958 6.77608 7.01012 7.52002 9.03362 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.010699 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.672916 B = 2616.552886 C = 3249.357879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.056 0.944 7 C -0.009 4.009 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.081 3.919 15 C -0.099 4.099 16 C -0.171 4.171 17 C -0.164 4.164 18 C -0.099 4.099 19 H 0.064 0.936 20 H 0.055 0.945 21 H 0.054 0.946 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.258 0.742 25 H 0.338 0.662 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 4.539 14.176 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.304 5.304 14 C -0.029 4.029 15 C -0.137 4.137 16 C -0.189 4.189 17 C -0.182 4.182 18 C -0.136 4.136 19 H 0.083 0.917 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.067 0.933 25 H 0.157 0.843 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.103 0.897 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.598 4.532 13.854 14.807 hybrid contribution 0.065 -0.051 -0.499 0.506 sum -2.533 4.481 13.355 14.313 Atomic orbital electron populations 1.22417 0.96705 1.01850 1.01855 1.21466 0.92040 0.96679 0.90839 0.92726 1.19007 0.95177 0.94207 0.91678 1.21520 0.93402 1.32092 1.06247 0.92555 1.25870 1.02870 0.95828 0.95860 1.70099 1.36968 1.38359 1.13004 0.85532 0.80746 0.77666 0.77879 1.19044 1.20895 1.20752 1.60433 1.58044 1.09139 1.02739 1.22371 0.96101 0.94319 0.90114 1.21449 0.97571 0.99644 0.95036 1.23404 1.00452 1.00532 0.94541 1.23371 0.97687 0.97266 0.99858 1.21513 1.00006 0.99287 0.92814 0.91734 0.92598 0.92666 0.99060 0.99046 0.93318 0.84268 0.92959 0.92197 0.92479 0.84468 0.83466 0.89732 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.15 71.98 0.66 -4.91 16 2 C 0.10 4.08 2.42 44.92 0.11 4.19 16 3 H 0.05 2.32 7.86 -2.38 -0.02 2.30 16 4 C 0.04 1.95 4.65 29.85 0.14 2.09 16 5 C -0.49 -28.69 8.84 25.60 0.23 -28.47 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 8 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.49 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.67 -25.09 5.77 -463.79 -2.68 -27.76 16 14 C 0.08 2.49 3.20 46.02 0.15 2.63 16 15 C -0.10 -3.20 6.54 30.55 0.20 -3.00 16 16 C -0.17 -4.34 10.78 26.28 0.28 -4.06 16 17 C -0.16 -3.69 10.78 26.26 0.28 -3.41 16 18 C -0.10 -2.45 6.30 30.53 0.19 -2.25 16 19 H 0.06 1.78 7.49 -2.38 -0.02 1.76 16 20 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.34 11.63 8.20 -89.69 -0.74 10.89 16 26 H 0.05 1.54 7.25 -2.39 -0.02 1.52 16 27 H 0.06 2.34 8.08 -2.38 -0.02 2.32 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 Total: -1.00 -65.22 265.95 2.67 -62.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.34 Total: 12.64 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 2.70 Total: -37.25 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.39 Total: -86.43 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -65.22 2.67 -62.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379314099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.209 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds