Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 C 1.31000 * 119.99882 * 124.99851 * 14 13 12 16 16 C 1.50694 * 120.00074 * 179.97438 * 15 14 13 17 17 C 1.52996 * 117.50146 * 188.62623 * 16 15 14 18 18 C 1.52995 * 117.49979 * 120.00153 * 16 15 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 23 23 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 24 24 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 25 25 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 26 26 H 1.07993 * 119.99916 * 304.99919 * 14 13 12 27 27 H 1.08004 * 119.99801 * 0.02562 * 15 14 13 28 28 H 1.09006 * 115.54834 * 334.33146 * 16 15 14 29 29 H 1.09005 * 117.50010 * 359.97438 * 17 16 15 30 30 H 1.09002 * 117.50098 * 145.02528 * 17 16 15 31 31 H 1.09002 * 117.50214 * 214.98231 * 18 16 15 32 32 H 1.08998 * 117.49801 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 6 1.8864 -0.5260 -4.6626 16 6 2.3916 -1.2700 -5.8718 17 6 1.6370 -1.0738 -7.1882 18 6 1.5153 -2.3949 -6.4262 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.9026 -0.5283 4.4376 23 1 2.9173 -1.1205 -1.0286 24 1 1.0872 0.6163 -2.5525 25 1 2.7589 1.0462 -2.1181 26 1 3.5273 -1.0519 -3.5101 27 1 0.9467 0.0044 -4.7085 28 1 3.4724 -1.4009 -5.9256 29 1 0.7748 -0.4069 -7.1795 30 1 2.2213 -1.0755 -8.1084 31 1 2.0195 -3.2658 -6.8451 32 1 0.5736 -2.5972 -5.9160 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382122050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = 38.533574 kcal Electronic energy + Delta-G solvation = -11774.921110 eV Core-core repulsion = 9736.554134 eV Total energy + Delta-G solvation = -2038.366976 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.75577 -36.32490 -33.48523 -31.78124 -29.17837 -25.47981 -24.43930 -22.42977 -21.16229 -19.93761 -19.41233 -16.76451 -15.84972 -15.25205 -14.77026 -13.99294 -13.77160 -13.24760 -12.77598 -12.57588 -12.13229 -11.69838 -11.55604 -11.43537 -11.12588 -10.85693 -10.70519 -10.62434 -10.27169 -10.08560 -9.49459 -9.02268 -8.67080 -8.59030 -7.45581 -6.09875 -4.09730 2.34255 3.27204 3.36282 3.38952 3.93051 4.38654 4.61795 4.88219 4.99968 5.19322 5.23145 5.31572 5.46202 5.54072 5.70404 5.82195 5.94696 6.03456 6.13357 6.20507 6.40215 6.54223 6.71820 6.81257 6.87108 7.06179 7.39585 7.57968 7.94396 8.35810 8.61954 8.94799 9.52364 11.03139 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.076756 B = 0.006276 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.704540 B = 4460.640607 C = 4600.494861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.079 0.921 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.675 5.675 13 C 0.082 3.918 14 C -0.127 4.127 15 C -0.141 4.141 16 C -0.119 4.119 17 C -0.181 4.181 18 C -0.174 4.174 19 H 0.058 0.942 20 H 0.025 0.975 21 H 0.037 0.963 22 H 0.264 0.736 23 H 0.340 0.660 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 1.588 -16.500 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.071 3.929 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.306 5.306 13 C -0.047 4.047 14 C -0.145 4.145 15 C -0.160 4.160 16 C -0.137 4.137 17 C -0.218 4.218 18 C -0.211 4.211 19 H 0.077 0.923 20 H 0.044 0.956 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.158 0.842 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.489 1.341 -16.450 16.571 hybrid contribution 0.134 1.287 0.492 1.384 sum -1.355 2.627 -15.958 16.229 Atomic orbital electron populations 1.22067 0.98717 1.01035 0.97649 1.19553 0.91811 0.92974 0.88519 0.98190 1.21113 1.32338 1.13771 0.88607 0.90330 1.24935 0.95693 0.96746 0.95732 1.69893 1.45575 1.40272 0.97925 0.86789 0.80701 0.83536 0.76733 1.20474 1.22512 1.19418 1.60571 1.32986 1.32289 1.04799 1.21064 0.99530 0.93818 0.90323 1.22803 0.99288 0.98393 0.94039 1.22058 0.99732 1.00842 0.93414 1.21180 0.97701 1.01666 0.93157 1.22951 1.03091 1.00465 0.95250 1.22943 1.02176 0.92240 1.03731 0.92319 0.95624 0.94499 0.92568 0.84219 0.91484 0.95124 0.87599 0.87488 0.87739 0.88824 0.88982 0.88854 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.89 37.16 0.33 -2.81 16 2 C 0.18 4.38 2.19 -68.87 -0.15 4.23 16 3 H 0.00 0.01 6.86 -51.93 -0.36 -0.34 16 4 C -0.52 -14.77 9.17 -34.44 -0.32 -15.08 16 5 H 0.08 2.40 7.86 -52.48 -0.41 1.98 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 8 Si 0.89 22.29 24.37 -169.99 -4.14 18.15 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.68 -14.21 6.29 -109.22 -0.69 -14.90 16 13 C 0.08 1.43 5.92 -4.97 -0.03 1.40 16 14 C -0.13 -1.87 9.41 -36.02 -0.34 -2.21 16 15 C -0.14 -1.88 9.27 -36.03 -0.33 -2.22 16 16 C -0.12 -1.35 5.99 -91.78 -0.55 -1.90 16 17 C -0.18 -1.74 10.23 -26.73 -0.27 -2.01 16 18 C -0.17 -1.80 10.23 -26.73 -0.27 -2.07 16 19 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 20 H 0.02 0.51 7.45 -51.93 -0.39 0.12 16 21 H 0.04 0.87 3.27 -51.93 -0.17 0.70 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.34 7.09 8.22 -39.29 -0.32 6.76 16 24 H 0.07 1.16 7.09 -51.93 -0.37 0.79 16 25 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 26 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 27 H 0.11 1.40 7.84 -52.48 -0.41 0.99 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 263.74 15.07 3.97 3.97 Total: -1.00 -29.81 263.74 -7.10 -36.91 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.99 Total: 3.39 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.03 Total: -20.71 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.09 Total: -41.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.81 -7.10 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382122050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.444 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds