Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30996 * 120.00197 * 2 1 4 4 C 1.50706 * 119.99836 * 179.72311 * 3 2 1 5 5 N 1.46900 * 109.46618 * 124.72828 * 4 3 2 6 6 C 1.46907 * 110.99791 * 176.72230 * 5 4 3 7 7 C 1.53001 * 109.47037 * 184.02924 * 6 5 4 8 8 C 1.50702 * 115.54895 * 56.43123 * 7 6 5 9 9 H 1.08007 * 119.99851 * 266.74016 * 8 7 6 10 10 C 1.37875 * 120.00485 * 86.73834 * 8 7 6 11 11 N 1.31512 * 120.00308 * 182.21660 * 10 8 7 12 12 Si 1.86804 * 119.99502 * 2.22040 * 10 8 7 13 13 H 1.48498 * 109.47148 * 84.66947 * 12 10 8 14 14 H 1.48500 * 109.46771 * 204.66653 * 12 10 8 15 15 H 1.48493 * 109.47428 * 324.66814 * 12 10 8 16 16 C 1.53002 * 117.50162 * 270.75922 * 7 6 5 17 17 C 1.52996 * 117.49905 * 202.09898 * 7 6 5 18 18 H 1.09009 * 109.46872 * 299.99894 * 1 2 3 19 19 H 1.08999 * 109.47267 * 59.99186 * 1 2 3 20 20 H 1.08993 * 109.47299 * 179.97438 * 1 2 3 21 21 H 1.08005 * 119.99433 * 180.02562 * 2 1 3 22 22 H 1.07995 * 120.00196 * 0.02562 * 3 2 1 23 23 H 1.08992 * 109.47053 * 244.72287 * 4 3 2 24 24 H 1.08994 * 109.47192 * 4.72999 * 4 3 2 25 25 H 1.00901 * 111.00192 * 300.67293 * 5 4 3 26 26 H 1.09001 * 109.46902 * 304.02742 * 6 5 4 27 27 H 1.08998 * 109.47252 * 64.03191 * 6 5 4 28 28 H 0.97004 * 119.99817 * 180.02562 * 11 10 8 29 29 H 1.08995 * 117.49292 * 359.97438 * 16 7 6 30 30 H 1.09001 * 117.49930 * 145.01969 * 16 7 6 31 31 H 1.09002 * 117.49807 * 214.98382 * 17 7 6 32 32 H 1.08997 * 117.50161 * 359.97272 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6691 1.1343 0.0063 5 7 4.1634 1.9206 -1.1318 6 6 5.6298 2.0078 -1.1141 7 6 6.1006 2.9146 -2.2530 8 6 5.5247 4.3073 -2.2553 9 1 4.6352 4.5229 -2.8287 10 6 6.1333 5.3062 -1.5254 11 7 5.6064 6.5107 -1.4923 12 14 7.7064 4.9487 -0.5836 13 1 8.8713 5.0901 -1.4937 14 1 7.8384 5.9083 0.5420 15 1 7.6602 3.5635 -0.0504 16 6 6.3747 2.2613 -3.6091 17 6 7.5402 2.7447 -2.7423 18 1 -0.3633 0.5139 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 2.0470 -0.9354 -0.0004 22 1 1.6221 2.0697 0.0004 23 1 4.0285 1.5753 0.9360 24 1 4.0327 0.1100 -0.0744 25 1 3.8345 1.5381 -2.0057 26 1 5.9576 2.4220 -0.1607 27 1 6.0546 1.0123 -1.2432 28 1 6.0348 7.2136 -0.9791 29 1 6.2201 1.1854 -3.6897 30 1 6.1389 2.8389 -4.5029 31 1 8.0706 3.6401 -3.0662 32 1 8.1521 1.9871 -2.2527 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384970015.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = 37.980211 kcal Electronic energy + Delta-G solvation = -12111.335613 eV Core-core repulsion = 10072.944641 eV Total energy + Delta-G solvation = -2038.390972 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.48193 -35.86926 -33.31908 -31.91770 -28.62967 -25.88207 -24.49705 -22.40032 -21.49433 -19.38596 -18.75623 -16.36349 -15.42639 -14.61746 -14.36429 -13.97476 -13.68848 -13.24710 -13.07474 -12.75011 -12.44898 -11.96006 -11.68641 -11.25488 -11.03011 -10.86656 -10.46740 -10.35611 -10.02248 -9.50439 -8.98985 -8.84465 -8.44587 -8.36711 -7.61109 -5.94997 -3.93640 2.38334 3.36943 3.45450 3.48709 4.54128 4.69408 5.03542 5.22490 5.24689 5.34126 5.51048 5.67247 5.72661 5.87256 5.90657 6.03639 6.09607 6.13530 6.24338 6.26524 6.47806 6.53373 6.76591 6.86896 6.98728 7.11260 7.21397 7.79440 7.88564 8.13216 8.67760 9.10111 9.68650 11.17923 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.009137 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363836 B = 3063.876398 C = 3323.006855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.181 4.181 3 C -0.135 4.135 4 C 0.085 3.915 5 N -0.659 5.659 6 C 0.099 3.901 7 C 0.007 3.993 8 C -0.458 4.458 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.904 5.904 12 Si 0.882 3.118 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.264 1.264 16 C -0.185 4.185 17 C -0.205 4.205 18 H 0.061 0.939 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.336 0.664 26 H 0.066 0.934 27 H 0.001 0.999 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -11.857 2.461 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.200 4.200 3 C -0.153 4.153 4 C -0.044 4.044 5 N -0.289 5.289 6 C -0.030 4.030 7 C 0.005 3.995 8 C -0.496 4.496 9 H 0.096 0.904 10 C -0.128 4.128 11 N -0.543 5.543 12 Si 0.711 3.289 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.189 1.189 16 C -0.222 4.222 17 C -0.243 4.243 18 H 0.080 0.920 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.120 0.880 22 H 0.133 0.867 23 H 0.094 0.906 24 H 0.038 0.962 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.647 -11.055 2.864 11.988 hybrid contribution 1.230 -0.995 0.291 1.608 sum -2.418 -12.050 3.155 12.689 Atomic orbital electron populations 1.20790 0.93357 1.01682 1.01887 1.22781 0.95998 0.97768 1.03450 1.22915 0.95802 0.98255 0.98345 1.21021 0.92067 0.94961 0.96370 1.60123 1.10418 1.54142 1.04240 1.21704 0.86352 0.94857 1.00106 1.19467 0.92945 0.96725 0.90321 1.20121 1.11835 0.88641 1.28962 0.90413 1.24927 0.97192 0.94869 0.95773 1.69895 1.40007 1.02175 1.42173 0.86873 0.84366 0.78167 0.79526 1.20662 1.22475 1.18935 1.22832 1.04495 0.97913 0.96963 1.22991 0.92686 1.02102 1.06543 0.92016 0.91803 0.92593 0.88032 0.86670 0.90630 0.96206 0.84648 0.91528 0.98080 0.92878 0.91437 0.89549 0.89323 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.17 36.01 0.37 -0.89 16 2 C -0.18 -2.26 9.87 -36.02 -0.36 -2.62 16 3 C -0.13 -1.98 9.44 -36.02 -0.34 -2.32 16 4 C 0.08 1.39 6.12 -4.97 -0.03 1.36 16 5 N -0.66 -12.99 6.18 -115.05 -0.71 -13.70 16 6 C 0.10 2.09 5.37 -3.82 -0.02 2.07 16 7 C 0.01 0.16 1.08 -155.66 -0.17 -0.01 16 8 C -0.46 -12.92 9.16 -34.44 -0.32 -13.24 16 9 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 10 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 12 Si 0.88 22.23 24.76 -169.99 -4.21 18.02 16 13 H -0.28 -6.91 7.00 56.52 0.40 -6.52 16 14 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 15 H -0.26 -6.33 5.89 56.52 0.33 -6.00 16 16 C -0.18 -3.79 9.93 -26.69 -0.27 -4.06 16 17 C -0.21 -4.45 7.60 -26.70 -0.20 -4.65 16 18 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 22 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 23 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 24 H 0.02 0.30 7.79 -51.93 -0.40 -0.11 16 25 H 0.34 6.26 8.80 -39.29 -0.35 5.92 16 26 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 27 H 0.00 0.02 8.10 -51.93 -0.42 -0.40 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -29.98 266.66 -6.86 -36.84 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.30 Total: 4.45 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.43 Total: -22.32 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.06 Total: -41.01 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.21 Total: 18.02 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.98 -6.86 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384970015.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.817 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds