Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30996 * 120.00197 * 2 1 4 4 C 1.50706 * 119.99836 * 179.72311 * 3 2 1 5 5 N 1.46900 * 109.46618 * 124.72828 * 4 3 2 6 6 C 1.46907 * 110.99791 * 176.72230 * 5 4 3 7 7 C 1.53001 * 109.47037 * 184.02924 * 6 5 4 8 8 C 1.50702 * 115.54895 * 56.43123 * 7 6 5 9 9 H 1.08007 * 119.99851 * 266.74016 * 8 7 6 10 10 C 1.37875 * 120.00485 * 86.73834 * 8 7 6 11 11 N 1.31512 * 120.00308 * 182.21660 * 10 8 7 12 12 Si 1.86804 * 119.99502 * 2.22040 * 10 8 7 13 13 H 1.48498 * 109.47148 * 84.66947 * 12 10 8 14 14 H 1.48500 * 109.46771 * 204.66653 * 12 10 8 15 15 H 1.48493 * 109.47428 * 324.66814 * 12 10 8 16 16 C 1.53002 * 117.50162 * 270.75922 * 7 6 5 17 17 C 1.52996 * 117.49905 * 202.09898 * 7 6 5 18 18 H 1.09009 * 109.46872 * 299.99894 * 1 2 3 19 19 H 1.08999 * 109.47267 * 59.99186 * 1 2 3 20 20 H 1.08993 * 109.47299 * 179.97438 * 1 2 3 21 21 H 1.08005 * 119.99433 * 180.02562 * 2 1 3 22 22 H 1.07995 * 120.00196 * 0.02562 * 3 2 1 23 23 H 1.08992 * 109.47053 * 244.72287 * 4 3 2 24 24 H 1.08994 * 109.47192 * 4.72999 * 4 3 2 25 25 H 1.00901 * 111.00192 * 300.67293 * 5 4 3 26 26 H 1.09001 * 109.46902 * 304.02742 * 6 5 4 27 27 H 1.08998 * 109.47252 * 64.03191 * 6 5 4 28 28 H 0.97004 * 119.99817 * 180.02562 * 11 10 8 29 29 H 1.08995 * 117.49292 * 359.97438 * 16 7 6 30 30 H 1.09001 * 117.49930 * 145.01969 * 16 7 6 31 31 H 1.09002 * 117.49807 * 214.98382 * 17 7 6 32 32 H 1.08997 * 117.50161 * 359.97272 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6691 1.1343 0.0063 5 7 4.1634 1.9206 -1.1318 6 6 5.6298 2.0078 -1.1141 7 6 6.1006 2.9146 -2.2530 8 6 5.5247 4.3073 -2.2553 9 1 4.6352 4.5229 -2.8287 10 6 6.1333 5.3062 -1.5254 11 7 5.6064 6.5107 -1.4923 12 14 7.7064 4.9487 -0.5836 13 1 8.8713 5.0901 -1.4937 14 1 7.8384 5.9083 0.5420 15 1 7.6602 3.5635 -0.0504 16 6 6.3747 2.2613 -3.6091 17 6 7.5402 2.7447 -2.7423 18 1 -0.3633 0.5139 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 2.0470 -0.9354 -0.0004 22 1 1.6221 2.0697 0.0004 23 1 4.0285 1.5753 0.9360 24 1 4.0327 0.1100 -0.0744 25 1 3.8345 1.5381 -2.0057 26 1 5.9576 2.4220 -0.1607 27 1 6.0546 1.0123 -1.2432 28 1 6.0348 7.2136 -0.9791 29 1 6.2201 1.1854 -3.6897 30 1 6.1389 2.8389 -4.5029 31 1 8.0706 3.6401 -3.0662 32 1 8.1521 1.9871 -2.2527 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384970015.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = 17.846125 kcal Electronic energy + Delta-G solvation = -12112.208692 eV Core-core repulsion = 10072.944641 eV Total energy + Delta-G solvation = -2039.264051 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14695 -37.17473 -34.62358 -34.09443 -29.82786 -27.82429 -26.06587 -23.78379 -23.12462 -20.88551 -20.24049 -18.29270 -17.15464 -16.37845 -15.66417 -15.45815 -15.18410 -14.74966 -14.42063 -14.22131 -14.02343 -13.43366 -13.10357 -12.97482 -12.36985 -12.30862 -12.12128 -12.02450 -11.80711 -11.43067 -10.90805 -10.52374 -10.24693 -9.88426 -9.06875 -8.18953 -6.21363 1.31030 1.37868 1.39693 1.51237 2.43311 3.11559 3.17355 3.59018 4.04765 4.15445 4.25637 4.38535 4.43613 4.51968 4.59539 4.69875 4.81789 4.83835 4.86344 4.87296 5.01607 5.10415 5.20230 5.41740 5.53117 5.79125 5.81978 5.90737 6.32050 6.45794 6.70187 6.84746 7.44552 8.97942 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.009137 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363836 B = 3063.876398 C = 3323.006855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.090 3.910 5 N -0.685 5.685 6 C 0.108 3.892 7 C -0.024 4.024 8 C -0.453 4.453 9 H 0.028 0.972 10 C 0.012 3.988 11 N -0.958 5.958 12 Si 0.943 3.057 13 H -0.268 1.268 14 H -0.304 1.304 15 H -0.239 1.239 16 C -0.164 4.164 17 C -0.200 4.200 18 H 0.066 0.934 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.340 0.660 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -14.923 2.881 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 C -0.185 4.185 4 C -0.038 4.038 5 N -0.316 5.316 6 C -0.022 4.022 7 C -0.025 4.025 8 C -0.491 4.491 9 H 0.046 0.954 10 C -0.184 4.184 11 N -0.600 5.600 12 Si 0.768 3.232 13 H -0.194 1.194 14 H -0.232 1.232 15 H -0.162 1.162 16 C -0.202 4.202 17 C -0.237 4.237 18 H 0.085 0.915 19 H 0.082 0.918 20 H 0.095 0.905 21 H 0.135 0.865 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.158 0.842 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.822 -14.157 3.273 14.802 hybrid contribution 0.821 -0.078 0.080 0.829 sum -2.001 -14.235 3.352 14.761 Atomic orbital electron populations 1.20871 0.91885 1.03176 1.02125 1.23062 0.97161 0.97416 0.99550 1.22710 0.95033 0.98498 1.02215 1.20992 0.92958 0.95353 0.94531 1.60051 1.09942 1.56026 1.05555 1.21488 0.87317 0.95493 0.97861 1.19400 0.94823 0.94944 0.93345 1.20280 1.09967 0.91622 1.27224 0.95409 1.25791 1.00893 0.94512 0.97179 1.70064 1.42208 1.03543 1.44141 0.85873 0.80191 0.79062 0.78036 1.19392 1.23161 1.16227 1.22863 1.02702 0.99644 0.94946 1.23030 0.92003 1.02403 1.06293 0.91476 0.91844 0.90479 0.86457 0.88455 0.91764 0.94063 0.84173 0.93340 0.95011 0.93058 0.87815 0.90612 0.90925 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 10.17 71.24 0.72 -1.54 16 2 C -0.15 -3.44 9.87 25.65 0.25 -3.19 16 3 C -0.17 -4.72 9.44 25.65 0.24 -4.48 16 4 C 0.09 2.81 6.12 85.56 0.52 3.34 16 5 N -0.68 -26.35 6.18 -517.92 -3.20 -29.55 16 6 C 0.11 4.31 5.37 86.30 0.46 4.77 16 7 C -0.02 -1.09 1.08 -52.93 -0.06 -1.14 16 8 C -0.45 -26.19 9.16 25.60 0.23 -25.96 16 9 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 10 C 0.01 0.69 5.47 84.65 0.46 1.15 16 11 N -0.96 -61.95 13.96 21.45 0.30 -61.65 16 12 Si 0.94 45.80 24.76 68.60 1.70 47.50 16 13 H -0.27 -12.43 7.00 99.48 0.70 -11.74 16 14 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 15 H -0.24 -10.54 5.89 99.48 0.59 -9.96 16 16 C -0.16 -6.30 9.93 30.62 0.30 -5.99 16 17 C -0.20 -8.01 7.60 30.62 0.23 -7.78 16 18 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 19 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.12 2.29 7.84 -2.91 -0.02 2.27 16 22 H 0.10 3.08 8.05 -2.91 -0.02 3.05 16 23 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 24 H 0.04 1.11 7.79 -2.39 -0.02 1.09 16 25 H 0.34 12.30 8.80 -89.69 -0.79 11.51 16 26 H 0.05 2.09 6.62 -2.39 -0.02 2.07 16 27 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 28 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.07 3.15 7.00 -2.39 -0.02 3.13 16 32 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -66.49 266.66 2.34 -64.15 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.15 Total: 20.37 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.38 Total: -40.82 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -2.90 Total: -91.19 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.70 Total: 47.50 kcal Total: -66.49 2.34 -64.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384970015.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.996 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds