Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47407 * 2 1 4 4 C 1.50706 * 109.47208 * 239.99998 * 2 1 3 5 5 H 1.08006 * 119.99739 * 245.54038 * 4 2 1 6 6 C 1.37880 * 119.99901 * 65.53547 * 4 2 1 7 7 N 1.31509 * 119.99984 * 198.88389 * 6 4 2 8 8 Si 1.86795 * 119.99861 * 19.16430 * 6 4 2 9 9 H 1.48499 * 109.47062 * 179.72178 * 8 6 4 10 10 H 1.48495 * 109.47371 * 299.72047 * 8 6 4 11 11 H 1.48504 * 109.47317 * 59.72075 * 8 6 4 12 12 N 1.46903 * 109.46936 * 120.00410 * 2 1 3 13 13 C 1.46900 * 110.99585 * 270.64789 * 12 2 1 14 14 C 1.53006 * 115.54862 * 159.36159 * 13 12 2 15 15 C 1.53000 * 117.49853 * 34.33240 * 14 13 12 16 16 C 1.52998 * 117.49650 * 325.66985 * 14 13 12 17 17 C 1.53002 * 117.50003 * 13.65831 * 13 12 2 18 18 C 1.52995 * 59.99934 * 252.50475 * 17 13 12 19 19 H 1.09005 * 109.47257 * 176.28602 * 1 2 3 20 20 H 1.09002 * 109.47095 * 296.28908 * 1 2 3 21 21 H 1.09001 * 109.47014 * 56.28966 * 1 2 3 22 22 H 0.97003 * 119.99774 * 355.16909 * 7 6 4 23 23 H 1.00904 * 110.99952 * 146.70265 * 12 2 1 24 24 H 1.09003 * 115.55001 * 180.02562 * 14 13 12 25 25 H 1.09000 * 117.49423 * 359.97438 * 15 14 13 26 26 H 1.08994 * 117.49907 * 145.02336 * 15 14 13 27 27 H 1.09000 * 117.50008 * 214.97959 * 16 14 13 28 28 H 1.09004 * 117.50435 * 359.97438 * 16 14 13 29 29 H 1.09003 * 117.49682 * 359.97438 * 17 13 12 30 30 H 1.08999 * 117.49944 * 145.01610 * 17 13 12 31 31 H 1.09003 * 117.50008 * 252.50889 * 18 17 13 32 32 H 1.09002 * 117.49859 * 107.48805 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5775 -1.6378 -1.1339 6 6 1.7959 -0.1766 -2.4796 7 7 1.8883 -0.9375 -3.5481 8 14 1.3521 1.6294 -2.6546 9 1 1.1559 1.9540 -4.0903 10 1 0.0980 1.9055 -1.9089 11 1 2.4496 2.4646 -2.1037 12 7 2.0196 -0.6926 1.1994 13 6 2.1804 0.2443 2.3194 14 6 2.2009 -0.3893 3.7120 15 6 2.8418 -1.7718 3.8498 16 6 1.3213 -1.6200 3.9411 17 6 1.5402 1.6270 2.1813 18 6 3.0599 1.4750 2.0903 19 1 -0.3634 -1.0255 -0.0666 20 1 -0.3633 0.4552 0.9214 21 1 -0.3633 0.5704 -0.8549 22 1 2.1906 -1.8555 -3.4651 23 1 2.8825 -1.1797 1.0088 24 1 2.3198 0.3059 4.5431 25 1 3.2484 -2.2300 2.9482 26 1 3.3823 -1.9863 4.7716 27 1 0.8622 -1.7348 4.9230 28 1 0.7276 -1.9781 3.0999 29 1 1.0001 1.8417 1.2592 30 1 1.1334 2.0856 3.0826 31 1 3.6529 1.8336 2.9318 32 1 3.5193 1.5896 1.1085 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388415516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = 52.236447 kcal Electronic energy + Delta-G solvation = -12739.454251 eV Core-core repulsion = 10701.681476 eV Total energy + Delta-G solvation = -2037.772775 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97497 -35.64526 -33.62800 -31.50628 -28.41539 -24.70129 -23.25809 -22.26027 -21.61647 -20.02960 -18.26219 -17.60178 -15.60295 -15.46133 -14.54352 -13.85570 -13.45585 -13.08167 -12.31378 -12.22269 -11.67473 -11.31024 -11.19771 -11.02806 -10.82028 -10.79073 -10.46101 -10.33925 -9.99133 -9.77276 -9.68011 -9.03766 -8.90462 -8.20791 -7.40906 -6.48353 -4.08731 3.35801 3.39553 3.57353 3.89374 4.45744 4.58259 4.82608 4.95736 5.21672 5.25637 5.30613 5.43578 5.67851 5.70971 5.93060 6.03885 6.05392 6.25868 6.43509 6.49417 6.53188 6.58378 6.64371 6.74565 6.89036 6.97136 7.52032 7.75226 8.11675 8.37325 8.50457 8.93321 9.59412 10.91316 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047272 B = 0.011576 C = 0.010545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.172619 B = 2418.312408 C = 2654.767949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.184 3.816 3 H 0.006 0.994 4 C -0.609 4.609 5 H 0.059 0.941 6 C 0.034 3.966 7 N -0.903 5.903 8 Si 1.043 2.957 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.641 5.641 13 C 0.088 3.912 14 C -0.109 4.109 15 C -0.176 4.176 16 C -0.164 4.164 17 C -0.181 4.181 18 C -0.220 4.220 19 H 0.048 0.952 20 H 0.026 0.974 21 H 0.047 0.953 22 H 0.268 0.732 23 H 0.340 0.660 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 3.309 12.575 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.647 4.647 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.872 3.128 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.271 5.271 13 C -0.005 4.005 14 C -0.128 4.128 15 C -0.213 4.213 16 C -0.201 4.201 17 C -0.219 4.219 18 C -0.259 4.259 19 H 0.067 0.933 20 H 0.045 0.955 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.160 0.840 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.904 4.217 11.625 12.399 hybrid contribution 1.286 -0.650 0.828 1.662 sum 0.382 3.567 12.453 12.960 Atomic orbital electron populations 1.22181 0.98309 1.00871 0.98389 1.19507 0.92142 0.93168 0.87627 0.97705 1.22108 1.40885 1.10278 0.91411 0.92322 1.25679 0.94360 1.05075 0.92099 1.70853 1.41838 1.09231 1.31802 0.84062 0.77158 0.75478 0.76123 1.21062 1.19929 1.21119 1.60303 1.34119 1.26796 1.05875 1.20990 1.01857 0.85781 0.91885 1.21522 1.06076 0.90420 0.94801 1.22842 0.96059 0.99851 1.02503 1.22868 0.93367 1.01572 1.02303 1.23352 0.95626 0.99516 1.03366 1.23523 0.93513 1.06157 1.02754 0.93293 0.95504 0.93380 0.92179 0.84028 0.88326 0.88520 0.89744 0.89954 0.87447 0.87564 0.89405 0.89584 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.57 37.16 0.32 -2.88 16 2 C 0.18 4.38 1.58 -68.86 -0.11 4.27 16 3 H 0.01 0.13 3.62 -51.93 -0.19 -0.05 16 4 C -0.61 -17.01 8.81 -34.44 -0.30 -17.32 16 5 H 0.06 1.76 7.85 -52.48 -0.41 1.35 16 6 C 0.03 0.97 5.33 -17.82 -0.09 0.88 16 7 N -0.90 -27.74 13.70 55.43 0.76 -26.98 16 8 Si 1.04 25.29 26.44 -169.99 -4.50 20.79 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.27 -6.14 5.61 56.52 0.32 -5.82 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.64 -13.37 5.50 -94.24 -0.52 -13.89 16 13 C 0.09 1.56 2.88 -131.60 -0.38 1.18 16 14 C -0.11 -1.64 5.85 -90.62 -0.53 -2.17 16 15 C -0.18 -2.46 10.02 -26.69 -0.27 -2.73 16 16 C -0.16 -2.38 10.02 -26.69 -0.27 -2.64 16 17 C -0.18 -3.12 8.57 -26.73 -0.23 -3.35 16 18 C -0.22 -3.74 9.59 -26.74 -0.26 -4.00 16 19 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 20 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 21 H 0.05 1.12 4.94 -51.93 -0.26 0.86 16 22 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 23 H 0.34 7.27 7.71 -39.29 -0.30 6.97 16 24 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.10 1.47 7.44 -51.93 -0.39 1.09 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 1.79 7.87 -51.93 -0.41 1.38 16 29 H 0.11 2.02 4.94 -51.93 -0.26 1.76 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.80 7.43 -51.93 -0.39 1.41 16 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -28.99 252.72 -7.28 -36.27 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.72 Total: 8.75 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -2.12 Total: -28.75 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.24 Total: -40.87 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.50 Total: 20.79 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.99 -7.28 -36.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388415516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.510 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds