Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47407 * 2 1 4 4 C 1.50706 * 109.47208 * 239.99998 * 2 1 3 5 5 H 1.08006 * 119.99739 * 245.54038 * 4 2 1 6 6 C 1.37880 * 119.99901 * 65.53547 * 4 2 1 7 7 N 1.31509 * 119.99984 * 198.88389 * 6 4 2 8 8 Si 1.86795 * 119.99861 * 19.16430 * 6 4 2 9 9 H 1.48499 * 109.47062 * 179.72178 * 8 6 4 10 10 H 1.48495 * 109.47371 * 299.72047 * 8 6 4 11 11 H 1.48504 * 109.47317 * 59.72075 * 8 6 4 12 12 N 1.46903 * 109.46936 * 120.00410 * 2 1 3 13 13 C 1.46900 * 110.99585 * 270.64789 * 12 2 1 14 14 C 1.53006 * 115.54862 * 159.36159 * 13 12 2 15 15 C 1.53000 * 117.49853 * 34.33240 * 14 13 12 16 16 C 1.52998 * 117.49650 * 325.66985 * 14 13 12 17 17 C 1.53002 * 117.50003 * 13.65831 * 13 12 2 18 18 C 1.52995 * 59.99934 * 252.50475 * 17 13 12 19 19 H 1.09005 * 109.47257 * 176.28602 * 1 2 3 20 20 H 1.09002 * 109.47095 * 296.28908 * 1 2 3 21 21 H 1.09001 * 109.47014 * 56.28966 * 1 2 3 22 22 H 0.97003 * 119.99774 * 355.16909 * 7 6 4 23 23 H 1.00904 * 110.99952 * 146.70265 * 12 2 1 24 24 H 1.09003 * 115.55001 * 180.02562 * 14 13 12 25 25 H 1.09000 * 117.49423 * 359.97438 * 15 14 13 26 26 H 1.08994 * 117.49907 * 145.02336 * 15 14 13 27 27 H 1.09000 * 117.50008 * 214.97959 * 16 14 13 28 28 H 1.09004 * 117.50435 * 359.97438 * 16 14 13 29 29 H 1.09003 * 117.49682 * 359.97438 * 17 13 12 30 30 H 1.08999 * 117.49944 * 145.01610 * 17 13 12 31 31 H 1.09003 * 117.50008 * 252.50889 * 18 17 13 32 32 H 1.09002 * 117.49859 * 107.48805 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5775 -1.6378 -1.1339 6 6 1.7959 -0.1766 -2.4796 7 7 1.8883 -0.9375 -3.5481 8 14 1.3521 1.6294 -2.6546 9 1 1.1559 1.9540 -4.0903 10 1 0.0980 1.9055 -1.9089 11 1 2.4496 2.4646 -2.1037 12 7 2.0196 -0.6926 1.1994 13 6 2.1804 0.2443 2.3194 14 6 2.2009 -0.3893 3.7120 15 6 2.8418 -1.7718 3.8498 16 6 1.3213 -1.6200 3.9411 17 6 1.5402 1.6270 2.1813 18 6 3.0599 1.4750 2.0903 19 1 -0.3634 -1.0255 -0.0666 20 1 -0.3633 0.4552 0.9214 21 1 -0.3633 0.5704 -0.8549 22 1 2.1906 -1.8555 -3.4651 23 1 2.8825 -1.1797 1.0088 24 1 2.3198 0.3059 4.5431 25 1 3.2484 -2.2300 2.9482 26 1 3.3823 -1.9863 4.7716 27 1 0.8622 -1.7348 4.9230 28 1 0.7276 -1.9781 3.0999 29 1 1.0001 1.8417 1.2592 30 1 1.1334 2.0856 3.0826 31 1 3.6529 1.8336 2.9318 32 1 3.5193 1.5896 1.1085 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388415516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = 33.561779 kcal Electronic energy + Delta-G solvation = -12740.264045 eV Core-core repulsion = 10701.681476 eV Total energy + Delta-G solvation = -2038.582569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39029 -37.02731 -35.43143 -33.48094 -30.16335 -26.80499 -24.58698 -23.50069 -22.82668 -21.82614 -19.94396 -19.48324 -17.13591 -16.83753 -16.22875 -15.25765 -15.24583 -14.73183 -14.13313 -13.89590 -13.46838 -13.03477 -12.55801 -12.46225 -12.33472 -12.21259 -12.14421 -11.84297 -11.62092 -11.55779 -11.05650 -10.95981 -10.43638 -10.31195 -9.06504 -8.75759 -6.40058 1.40705 1.47258 1.66573 2.43389 2.65672 3.01531 3.32186 3.39441 3.65048 3.96831 4.07780 4.27297 4.42902 4.47253 4.57517 4.74002 4.75602 4.86315 4.89595 4.96537 5.01602 5.13985 5.24552 5.26846 5.36450 5.48216 5.64121 5.77865 5.98452 6.25895 6.67430 6.75559 7.37415 8.59317 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047272 B = 0.011576 C = 0.010545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.172619 B = 2418.312408 C = 2654.767949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.190 3.810 3 H 0.011 0.989 4 C -0.611 4.611 5 H 0.020 0.980 6 C -0.017 4.017 7 N -0.935 5.935 8 Si 1.080 2.920 9 H -0.287 1.287 10 H -0.242 1.242 11 H -0.267 1.267 12 N -0.646 5.646 13 C 0.071 3.929 14 C -0.110 4.110 15 C -0.173 4.173 16 C -0.165 4.165 17 C -0.179 4.179 18 C -0.215 4.215 19 H 0.031 0.969 20 H 0.053 0.947 21 H 0.044 0.956 22 H 0.252 0.748 23 H 0.331 0.669 24 H 0.128 0.872 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 5.233 15.136 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.081 3.919 3 H 0.028 0.972 4 C -0.649 4.649 5 H 0.039 0.961 6 C -0.215 4.215 7 N -0.571 5.571 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.166 1.166 11 H -0.192 1.192 12 N -0.275 5.275 13 C -0.021 4.021 14 C -0.128 4.128 15 C -0.210 4.210 16 C -0.202 4.202 17 C -0.216 4.216 18 C -0.254 4.254 19 H 0.050 0.950 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.150 0.850 24 H 0.146 0.854 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.349 6.128 14.218 15.542 hybrid contribution 1.484 -1.344 0.064 2.003 sum 0.135 4.784 14.282 15.063 Atomic orbital electron populations 1.22068 0.97363 1.00010 0.99594 1.19329 0.92700 0.92854 0.87040 0.97174 1.22360 1.39895 1.08969 0.93683 0.96122 1.27108 0.93979 1.08595 0.91863 1.70984 1.44400 1.08783 1.32915 0.83626 0.78941 0.70779 0.76535 1.21320 1.16634 1.19209 1.60246 1.33841 1.27682 1.05754 1.21243 1.03104 0.85791 0.91980 1.21604 1.06466 0.91019 0.93725 1.22881 0.96042 0.99199 1.02852 1.22852 0.93381 1.01334 1.02608 1.23429 0.95463 0.98745 1.03935 1.23506 0.93892 1.05440 1.02584 0.95000 0.92815 0.93722 0.93870 0.85013 0.85440 0.90679 0.86980 0.87228 0.90339 0.89414 0.86235 0.86621 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.57 71.98 0.62 -5.29 16 2 C 0.19 8.96 1.58 44.17 0.07 9.03 16 3 H 0.01 0.50 3.62 -2.39 -0.01 0.49 16 4 C -0.61 -35.08 8.81 25.60 0.23 -34.86 16 5 H 0.02 1.30 7.85 -2.91 -0.02 1.28 16 6 C -0.02 -0.97 5.33 84.66 0.45 -0.52 16 7 N -0.94 -59.24 13.70 21.45 0.29 -58.94 16 8 Si 1.08 50.25 26.44 68.60 1.81 52.06 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.24 -10.02 5.61 99.48 0.56 -9.46 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 N -0.65 -26.83 5.50 -452.07 -2.49 -29.31 16 13 C 0.07 2.36 2.88 3.53 0.01 2.37 16 14 C -0.11 -2.91 5.85 -10.79 -0.06 -2.98 16 15 C -0.17 -4.43 10.02 30.62 0.31 -4.13 16 16 C -0.16 -4.36 10.02 30.62 0.31 -4.05 16 17 C -0.18 -5.51 8.57 30.59 0.26 -5.25 16 18 C -0.21 -6.71 9.59 30.59 0.29 -6.42 16 19 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 20 H 0.05 2.08 6.68 -2.39 -0.02 2.07 16 21 H 0.04 1.99 4.94 -2.39 -0.01 1.98 16 22 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 23 H 0.33 14.53 7.71 -89.69 -0.69 13.84 16 24 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.07 2.25 7.44 -2.39 -0.02 2.23 16 26 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.08 2.55 7.87 -2.38 -0.02 2.53 16 29 H 0.09 3.06 4.94 -2.39 -0.01 3.05 16 30 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.07 2.54 7.43 -2.39 -0.02 2.52 16 Total: -1.00 -63.78 252.72 2.33 -61.45 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.23 Total: 26.82 kcal Atomic # 6 Polarization: -54.56 SS G_CDS: 2.48 Total: -52.08 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.19 Total: -88.26 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 1.81 Total: 52.06 kcal Total: -63.78 2.33 -61.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388415516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.016 kcal (2) G-P(sol) polarization free energy of solvation -63.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds