Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46689 * 2 1 4 4 C 1.50707 * 109.47164 * 119.99508 * 2 1 3 5 5 H 1.07999 * 119.99690 * 119.99933 * 4 2 1 6 6 C 1.37874 * 119.99920 * 300.00511 * 4 2 1 7 7 N 1.31516 * 119.99856 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00224 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46855 * 90.00402 * 8 6 4 10 10 H 1.48500 * 109.47005 * 210.00127 * 8 6 4 11 11 H 1.48501 * 109.47266 * 330.00714 * 8 6 4 12 12 N 1.46895 * 109.47352 * 239.99749 * 2 1 3 13 13 C 1.46897 * 111.00003 * 106.60735 * 12 2 1 14 14 C 1.52997 * 115.55088 * 185.31443 * 13 12 2 15 15 C 1.52996 * 117.49947 * 325.66902 * 14 13 12 16 16 C 1.52994 * 117.49954 * 34.32785 * 14 13 12 17 17 C 1.53001 * 117.49998 * 330.98329 * 13 12 2 18 18 C 1.53005 * 117.50161 * 39.64376 * 13 12 2 19 19 H 1.09003 * 109.46896 * 186.15867 * 1 2 3 20 20 H 1.09005 * 109.47248 * 306.15789 * 1 2 3 21 21 H 1.09003 * 109.47332 * 66.15934 * 1 2 3 22 22 H 0.96995 * 120.00141 * 179.97438 * 7 6 4 23 23 H 1.00901 * 110.99792 * 342.65660 * 12 2 1 24 24 H 1.09000 * 115.55468 * 180.02562 * 14 13 12 25 25 H 1.09002 * 117.50452 * 215.00892 * 15 14 13 26 26 H 1.09006 * 117.50157 * 0.02562 * 15 14 13 27 27 H 1.08999 * 117.50138 * 359.97438 * 16 14 13 28 28 H 1.09005 * 117.50280 * 144.97643 * 16 14 13 29 29 H 1.09005 * 117.49932 * 214.99928 * 17 13 12 30 30 H 1.09004 * 117.49647 * 0.02562 * 17 13 12 31 31 H 1.09002 * 117.49423 * 359.97153 * 18 13 12 32 32 H 1.08997 * 117.50358 * 144.99328 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8489 2.1773 1.4921 12 7 2.0197 -0.6925 -1.1993 13 6 2.5648 0.2627 -2.1731 14 6 2.9891 -0.3340 -3.5165 15 6 3.5765 -1.7467 -3.5079 16 6 2.1691 -1.5060 -4.0595 17 6 1.9774 1.6755 -2.1818 18 6 3.3849 1.4348 -1.6302 19 1 -0.3633 -1.0218 0.1103 20 1 -0.3634 0.6064 0.8298 21 1 -0.3634 0.4154 -0.9400 22 1 1.9031 -0.5278 4.4376 23 1 1.2925 -1.2560 -1.6137 24 1 3.3940 0.3747 -4.2390 25 1 4.3675 -1.9674 -4.2248 26 1 3.6603 -2.2512 -2.5453 27 1 1.3275 -1.8522 -3.4595 28 1 2.0337 -1.5681 -5.1393 29 1 1.8933 2.1798 -3.1445 30 1 1.1868 1.8962 -1.4646 31 1 3.5195 1.4972 -0.5503 32 1 4.2267 1.7806 -2.2299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388415518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 63.116115 kcal Electronic energy + Delta-G solvation = -12733.773270 eV Core-core repulsion = 10696.472272 eV Total energy + Delta-G solvation = -2037.300997 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.05145 -35.71121 -33.66233 -31.62566 -28.42354 -25.09445 -23.37643 -22.29111 -21.60474 -20.34741 -18.47398 -16.89432 -15.70394 -15.44425 -14.63659 -13.88616 -13.41476 -13.07017 -12.57834 -12.33534 -11.98582 -11.41767 -11.21720 -11.13490 -11.05246 -10.74787 -10.51179 -10.35935 -10.08181 -9.70658 -9.52141 -9.42914 -8.95133 -8.52396 -7.23974 -6.01769 -3.97831 3.25981 3.34831 3.38332 3.88350 4.41712 4.58195 4.78454 4.92358 5.16291 5.27257 5.27664 5.41273 5.66478 5.73026 5.84888 6.02061 6.08771 6.20692 6.24897 6.30457 6.39819 6.40924 6.58300 6.59840 6.69276 6.79876 7.10778 7.76493 7.94253 8.30429 8.74041 9.11892 9.61152 11.12005 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047969 B = 0.011358 C = 0.010643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.564623 B = 2464.583442 C = 2630.324895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.492 4.492 5 H 0.082 0.918 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.882 3.118 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.631 5.631 13 C 0.091 3.909 14 C -0.112 4.112 15 C -0.165 4.165 16 C -0.182 4.182 17 C -0.230 4.230 18 C -0.168 4.168 19 H 0.057 0.943 20 H 0.044 0.956 21 H 0.029 0.971 22 H 0.262 0.738 23 H 0.330 0.670 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 2.832 -12.939 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.063 3.937 3 H 0.059 0.941 4 C -0.530 4.530 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.713 3.287 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.259 5.259 13 C -0.002 4.002 14 C -0.130 4.130 15 C -0.202 4.202 16 C -0.219 4.219 17 C -0.270 4.270 18 C -0.206 4.206 19 H 0.077 0.923 20 H 0.062 0.938 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.130 2.644 -12.442 12.721 hybrid contribution -1.528 1.354 -0.029 2.042 sum -1.658 3.998 -12.471 13.201 Atomic orbital electron populations 1.22824 1.00826 1.01400 0.98679 1.19879 0.89052 0.95512 0.89227 0.94130 1.21036 1.30859 1.13568 0.87561 0.90006 1.24936 0.96061 0.96555 0.95941 1.69881 1.46091 1.40350 0.97783 0.86954 0.80781 0.84145 0.76822 1.20800 1.22407 1.19579 1.60367 1.38978 1.21749 1.04843 1.20935 1.01827 0.85650 0.91794 1.21570 1.04668 0.91213 0.95595 1.22937 0.95329 0.98607 1.03290 1.22909 0.95724 1.03309 1.00005 1.23685 0.97809 1.03203 1.02298 1.23165 0.93564 1.01774 1.02056 0.92350 0.93755 0.95210 0.92763 0.85074 0.88009 0.89602 0.87170 0.88775 0.89419 0.89830 0.88633 0.87551 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.12 37.16 0.30 -3.58 16 2 C 0.17 4.03 1.38 -68.86 -0.10 3.93 16 3 H 0.04 0.99 3.35 -51.93 -0.17 0.81 16 4 C -0.49 -13.96 9.42 -34.44 -0.32 -14.28 16 5 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 8 Si 0.88 22.09 24.31 -169.99 -4.13 17.96 16 9 H -0.28 -6.88 6.93 56.52 0.39 -6.49 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.63 -12.91 5.94 -94.25 -0.56 -13.47 16 13 C 0.09 1.61 2.99 -131.60 -0.39 1.21 16 14 C -0.11 -1.63 5.84 -90.63 -0.53 -2.16 16 15 C -0.16 -2.30 10.02 -26.70 -0.27 -2.57 16 16 C -0.18 -2.38 9.97 -26.70 -0.27 -2.65 16 17 C -0.23 -3.89 9.39 -26.69 -0.25 -4.14 16 18 C -0.17 -2.99 9.46 -26.69 -0.25 -3.24 16 19 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 20 H 0.04 1.00 3.46 -51.93 -0.18 0.82 16 21 H 0.03 0.55 7.64 -51.93 -0.40 0.16 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.33 6.26 6.53 -39.29 -0.26 6.00 16 24 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.11 1.78 7.87 -51.93 -0.41 1.38 16 27 H 0.09 1.28 6.71 -51.93 -0.35 0.93 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.77 5.82 -51.93 -0.30 1.47 16 31 H 0.11 2.18 6.74 -51.93 -0.35 1.83 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 250.12 15.07 3.77 3.77 Total: -1.00 -29.86 250.12 -6.88 -36.74 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.55 Total: 7.78 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.17 Total: -25.64 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.21 Total: -40.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.86 -6.88 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388415518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.856 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds