Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46689 * 2 1 4 4 C 1.50707 * 109.47164 * 119.99508 * 2 1 3 5 5 H 1.07999 * 119.99690 * 119.99933 * 4 2 1 6 6 C 1.37874 * 119.99920 * 300.00511 * 4 2 1 7 7 N 1.31516 * 119.99856 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00224 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46855 * 90.00402 * 8 6 4 10 10 H 1.48500 * 109.47005 * 210.00127 * 8 6 4 11 11 H 1.48501 * 109.47266 * 330.00714 * 8 6 4 12 12 N 1.46895 * 109.47352 * 239.99749 * 2 1 3 13 13 C 1.46897 * 111.00003 * 106.60735 * 12 2 1 14 14 C 1.52997 * 115.55088 * 185.31443 * 13 12 2 15 15 C 1.52996 * 117.49947 * 325.66902 * 14 13 12 16 16 C 1.52994 * 117.49954 * 34.32785 * 14 13 12 17 17 C 1.53001 * 117.49998 * 330.98329 * 13 12 2 18 18 C 1.53005 * 117.50161 * 39.64376 * 13 12 2 19 19 H 1.09003 * 109.46896 * 186.15867 * 1 2 3 20 20 H 1.09005 * 109.47248 * 306.15789 * 1 2 3 21 21 H 1.09003 * 109.47332 * 66.15934 * 1 2 3 22 22 H 0.96995 * 120.00141 * 179.97438 * 7 6 4 23 23 H 1.00901 * 110.99792 * 342.65660 * 12 2 1 24 24 H 1.09000 * 115.55468 * 180.02562 * 14 13 12 25 25 H 1.09002 * 117.50452 * 215.00892 * 15 14 13 26 26 H 1.09006 * 117.50157 * 0.02562 * 15 14 13 27 27 H 1.08999 * 117.50138 * 359.97438 * 16 14 13 28 28 H 1.09005 * 117.50280 * 144.97643 * 16 14 13 29 29 H 1.09005 * 117.49932 * 214.99928 * 17 13 12 30 30 H 1.09004 * 117.49647 * 0.02562 * 17 13 12 31 31 H 1.09002 * 117.49423 * 359.97153 * 18 13 12 32 32 H 1.08997 * 117.50358 * 144.99328 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8489 2.1773 1.4921 12 7 2.0197 -0.6925 -1.1993 13 6 2.5648 0.2627 -2.1731 14 6 2.9891 -0.3340 -3.5165 15 6 3.5765 -1.7467 -3.5079 16 6 2.1691 -1.5060 -4.0595 17 6 1.9774 1.6755 -2.1818 18 6 3.3849 1.4348 -1.6302 19 1 -0.3633 -1.0218 0.1103 20 1 -0.3634 0.6064 0.8298 21 1 -0.3634 0.4154 -0.9400 22 1 1.9031 -0.5278 4.4376 23 1 1.2925 -1.2560 -1.6137 24 1 3.3940 0.3747 -4.2390 25 1 4.3675 -1.9674 -4.2248 26 1 3.6603 -2.2512 -2.5453 27 1 1.3275 -1.8522 -3.4595 28 1 2.0337 -1.5681 -5.1393 29 1 1.8933 2.1798 -3.1445 30 1 1.1868 1.8962 -1.4646 31 1 3.5195 1.4972 -0.5503 32 1 4.2267 1.7806 -2.2299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388415518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 42.883864 kcal Electronic energy + Delta-G solvation = -12734.650606 eV Core-core repulsion = 10696.472272 eV Total energy + Delta-G solvation = -2038.178333 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.44907 -37.05557 -35.37683 -33.65784 -30.14098 -27.16895 -24.68844 -23.49490 -22.81344 -22.10407 -19.93663 -18.86017 -17.22619 -16.97196 -16.46642 -15.28518 -15.01571 -14.69719 -14.37814 -13.96856 -13.69652 -13.04749 -12.73769 -12.67548 -12.27958 -12.25259 -12.17454 -11.93822 -11.58739 -11.43223 -11.27654 -10.91515 -10.73048 -10.46000 -8.81898 -8.27549 -6.28515 1.26239 1.31525 1.41318 2.29908 2.68567 3.05908 3.30213 3.39290 3.67258 3.94538 4.09724 4.25112 4.39501 4.47148 4.50973 4.54381 4.62435 4.77580 4.80170 4.90060 5.00055 5.06467 5.23067 5.30212 5.32820 5.37345 5.46338 5.68671 6.05510 6.68122 6.77358 6.78645 7.35257 8.90313 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047969 B = 0.011358 C = 0.010643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.564623 B = 2464.583442 C = 2630.324895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.179 3.821 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.031 0.969 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.949 3.051 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.251 1.251 12 N -0.647 5.647 13 C 0.081 3.919 14 C -0.116 4.116 15 C -0.173 4.173 16 C -0.168 4.168 17 C -0.214 4.214 18 C -0.182 4.182 19 H 0.054 0.946 20 H 0.037 0.963 21 H 0.063 0.937 22 H 0.264 0.736 23 H 0.338 0.662 24 H 0.128 0.872 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 4.423 -15.579 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.069 3.931 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.050 0.950 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.176 1.176 12 N -0.276 5.276 13 C -0.012 4.012 14 C -0.134 4.134 15 C -0.210 4.210 16 C -0.205 4.205 17 C -0.253 4.253 18 C -0.219 4.219 19 H 0.073 0.927 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.158 0.842 24 H 0.146 0.854 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.247 4.230 -15.115 15.746 hybrid contribution -1.084 0.758 0.773 1.532 sum -2.331 4.989 -14.342 15.363 Atomic orbital electron populations 1.22691 0.98886 1.01436 1.00179 1.19603 0.90366 0.94617 0.88467 0.94356 1.21330 1.29875 1.12200 0.90193 0.95036 1.25797 0.97687 1.00038 0.95407 1.70049 1.48204 1.42644 0.98483 0.85859 0.79229 0.80108 0.77173 1.19234 1.22601 1.17554 1.60130 1.39340 1.22930 1.05228 1.21143 1.01917 0.85636 0.92506 1.21638 1.05595 0.91821 0.94388 1.22912 0.97154 0.98331 1.02590 1.22988 0.94553 1.01446 1.01478 1.23683 0.96257 1.02227 1.03156 1.23177 0.95457 1.02900 1.00409 0.92672 0.94440 0.91803 0.92685 0.84196 0.85389 0.87238 0.90396 0.89760 0.86486 0.86564 0.90197 0.91201 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.18 8.12 71.98 0.58 -6.60 16 2 C 0.18 8.33 1.38 44.17 0.06 8.40 16 3 H 0.04 1.84 3.35 -2.39 -0.01 1.83 16 4 C -0.50 -29.22 9.42 25.60 0.24 -28.98 16 5 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 6 C 0.01 0.41 5.45 84.65 0.46 0.88 16 7 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 8 Si 0.95 45.68 24.31 68.60 1.67 47.35 16 9 H -0.27 -12.14 6.93 99.48 0.69 -11.45 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.25 -11.21 6.53 99.48 0.65 -10.56 16 12 N -0.65 -26.29 5.94 -452.09 -2.68 -28.97 16 13 C 0.08 2.69 2.99 3.53 0.01 2.70 16 14 C -0.12 -3.01 5.84 -10.80 -0.06 -3.07 16 15 C -0.17 -4.50 10.02 30.62 0.31 -4.19 16 16 C -0.17 -3.84 9.97 30.61 0.31 -3.54 16 17 C -0.21 -6.54 9.39 30.62 0.29 -6.26 16 18 C -0.18 -6.19 9.46 30.62 0.29 -5.90 16 19 H 0.05 2.28 8.14 -2.39 -0.02 2.27 16 20 H 0.04 1.59 3.46 -2.38 -0.01 1.58 16 21 H 0.06 2.19 7.64 -2.39 -0.02 2.18 16 22 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.34 12.56 6.53 -89.69 -0.59 11.98 16 24 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.08 2.54 7.87 -2.38 -0.02 2.52 16 27 H 0.08 2.10 6.71 -2.39 -0.02 2.09 16 28 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 30 H 0.08 2.72 5.82 -2.39 -0.01 2.71 16 31 H 0.07 2.89 6.74 -2.39 -0.02 2.88 16 32 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -66.69 250.12 2.22 -64.48 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.45 Total: 24.50 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 2.48 Total: -46.56 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -2.38 Total: -89.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Total: -66.69 2.22 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388415518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.360 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds