Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46906 * 110.99853 * 169.99766 * 4 3 2 6 6 C 1.50693 * 109.47155 * 190.00173 * 5 4 3 7 7 H 1.08002 * 120.00119 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00394 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99538 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00401 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47263 * 89.99861 * 10 8 6 12 12 H 1.48503 * 109.47049 * 209.99560 * 10 8 6 13 13 H 1.48500 * 109.47231 * 329.99846 * 10 8 6 14 14 C 1.46893 * 111.00243 * 293.95400 * 4 3 2 15 15 C 1.53779 * 113.61668 * 155.18750 * 14 4 3 16 16 C 1.53963 * 87.01971 * 220.04742 * 15 14 4 17 17 C 1.53771 * 113.61670 * 57.57378 * 14 4 3 18 18 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 19 19 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 22 22 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 23 23 H 1.09000 * 109.47257 * 310.00208 * 5 4 3 24 24 H 1.09006 * 109.46871 * 70.00245 * 5 4 3 25 25 H 0.96996 * 120.00250 * 180.02562 * 9 8 6 26 26 H 1.09009 * 112.84978 * 286.38025 * 14 4 3 27 27 H 1.08999 * 113.61203 * 334.56122 * 15 14 4 28 28 H 1.08992 * 113.61897 * 105.46640 * 15 14 4 29 29 H 1.08997 * 113.53348 * 270.81196 * 16 15 14 30 30 H 1.08996 * 113.66553 * 139.93042 * 16 15 14 31 31 H 1.09006 * 113.62082 * 254.53119 * 17 14 4 32 32 H 1.09006 * 113.61858 * 25.35224 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.9125 2.4760 1.0358 6 6 5.0018 2.3377 2.0679 7 1 5.0126 1.4851 2.7307 8 6 5.9847 3.2997 2.1662 9 7 5.9718 4.3377 1.3587 10 14 7.3344 3.1287 3.4460 11 1 8.4755 2.3769 2.8647 12 1 7.7926 4.4776 3.8655 13 1 6.8082 2.3957 4.6255 14 6 2.2711 1.3471 2.4120 15 6 3.0843 0.7822 3.5886 16 6 1.7824 0.1096 4.0608 17 6 1.3202 0.1526 2.5947 18 1 -0.5401 -0.9353 0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.8500 -0.9353 0.0004 21 1 2.6213 1.4026 -0.9314 22 1 1.3585 2.1317 0.0896 23 1 4.3562 2.5012 0.0405 24 1 3.3608 3.3996 1.2112 25 1 6.6634 5.0143 1.4274 26 1 1.8076 2.3106 2.6243 27 1 3.8563 0.0748 3.2861 28 1 3.4539 1.5474 4.2712 29 1 1.1857 0.7346 4.7252 30 1 1.9259 -0.9007 4.4440 31 1 0.2677 0.4101 2.4761 32 1 1.6082 -0.7270 2.0188 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388515552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 46.287553 kcal Electronic energy + Delta-G solvation = -12676.931201 eV Core-core repulsion = 10638.900463 eV Total energy + Delta-G solvation = -2038.030738 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.83923 -34.98961 -33.38671 -31.79364 -27.26113 -25.15082 -24.68219 -23.44374 -20.69853 -19.48391 -18.64503 -16.36136 -15.24754 -15.00297 -14.57857 -14.11009 -13.69070 -13.27195 -12.44147 -12.04489 -11.78202 -11.66589 -11.28382 -10.94113 -10.90561 -10.77673 -10.55376 -10.35100 -9.93908 -9.81526 -9.36386 -8.99071 -8.62842 -8.37610 -7.23758 -5.98182 -3.98017 2.64159 3.34032 3.40076 3.43362 4.46247 4.98041 5.28240 5.33817 5.37005 5.40388 5.57246 5.64837 5.68332 6.02062 6.16483 6.21270 6.27749 6.33336 6.36109 6.49682 6.84285 6.93152 6.94718 6.98588 7.12974 7.32618 7.43964 7.87943 8.14363 8.28166 8.60731 9.10246 9.65672 11.13221 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043932 B = 0.011150 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.201649 B = 2510.668883 C = 3003.119044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.113 4.113 3 C 0.076 3.924 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.074 0.926 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.076 3.924 15 C -0.105 4.105 16 C -0.156 4.156 17 C -0.132 4.132 18 H 0.091 0.909 19 H 0.089 0.911 20 H 0.108 0.892 21 H 0.076 0.924 22 H 0.025 0.975 23 H 0.029 0.971 24 H -0.011 1.011 25 H 0.260 0.740 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 -7.064 1.137 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.131 4.131 3 C -0.052 4.052 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.092 0.908 8 C -0.148 4.148 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.194 4.194 17 C -0.169 4.169 18 H 0.109 0.891 19 H 0.107 0.893 20 H 0.126 0.874 21 H 0.094 0.906 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.007 0.993 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.089 -7.303 1.077 10.951 hybrid contribution 0.326 0.891 0.622 1.135 sum -7.763 -6.412 1.699 10.211 Atomic orbital electron populations 1.23628 0.95888 1.01012 1.05424 1.22958 0.95383 0.99059 0.95729 1.21177 0.94618 0.93314 0.96111 1.62395 1.16544 1.46591 0.99396 1.19745 0.90316 0.85341 0.97932 1.21390 1.08453 1.07278 1.17220 0.90828 1.25005 0.98120 0.95367 0.96312 1.69967 1.34585 1.11300 1.38310 0.86550 0.82217 0.77151 0.81829 1.20725 1.21443 1.19797 1.22811 0.94142 0.95414 0.90954 1.22884 0.95390 0.99523 0.96487 1.22948 0.99527 1.00304 0.96660 1.23340 0.97986 0.99711 0.95874 0.89089 0.89257 0.87368 0.90591 0.95635 0.95326 0.99311 0.93083 0.93212 0.89521 0.91754 0.91244 0.92205 0.92656 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.94 12.63 29.02 0.37 -2.58 16 2 C -0.11 -1.72 6.36 -36.02 -0.23 -1.95 16 3 C 0.08 1.40 5.40 -4.97 -0.03 1.37 16 4 N -0.52 -11.41 4.55 -228.55 -1.04 -12.45 16 5 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 6 C -0.50 -14.05 8.33 -34.44 -0.29 -14.33 16 7 H 0.07 1.98 4.97 -52.49 -0.26 1.72 16 8 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.08 1.50 3.08 -66.91 -0.21 1.30 16 15 C -0.11 -2.02 5.44 -25.82 -0.14 -2.16 16 16 C -0.16 -2.43 8.09 -25.82 -0.21 -2.64 16 17 C -0.13 -2.12 5.30 -25.92 -0.14 -2.26 16 18 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 19 H 0.09 1.18 7.84 -52.48 -0.41 0.77 16 20 H 0.11 1.61 7.77 -52.49 -0.41 1.20 16 21 H 0.08 1.41 7.93 -51.93 -0.41 0.99 16 22 H 0.03 0.47 7.77 -51.93 -0.40 0.07 16 23 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 24 H -0.01 -0.31 8.10 -51.93 -0.42 -0.73 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.05 1.05 8.12 -51.92 -0.42 0.63 16 27 H 0.09 1.76 7.35 -51.93 -0.38 1.38 16 28 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.83 7.19 -51.93 -0.37 0.46 16 32 H 0.09 1.41 6.10 -51.93 -0.32 1.10 16 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -28.97 255.29 -7.51 -36.48 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.04 Total: -1.50 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.99 Total: -16.84 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.30 Total: -38.72 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.97 -7.51 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388515552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.771 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds