Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46906 * 110.99853 * 169.99766 * 4 3 2 6 6 C 1.50693 * 109.47155 * 190.00173 * 5 4 3 7 7 H 1.08002 * 120.00119 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00394 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99538 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00401 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47263 * 89.99861 * 10 8 6 12 12 H 1.48503 * 109.47049 * 209.99560 * 10 8 6 13 13 H 1.48500 * 109.47231 * 329.99846 * 10 8 6 14 14 C 1.46893 * 111.00243 * 293.95400 * 4 3 2 15 15 C 1.53779 * 113.61668 * 155.18750 * 14 4 3 16 16 C 1.53963 * 87.01971 * 220.04742 * 15 14 4 17 17 C 1.53771 * 113.61670 * 57.57378 * 14 4 3 18 18 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 19 19 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 22 22 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 23 23 H 1.09000 * 109.47257 * 310.00208 * 5 4 3 24 24 H 1.09006 * 109.46871 * 70.00245 * 5 4 3 25 25 H 0.96996 * 120.00250 * 180.02562 * 9 8 6 26 26 H 1.09009 * 112.84978 * 286.38025 * 14 4 3 27 27 H 1.08999 * 113.61203 * 334.56122 * 15 14 4 28 28 H 1.08992 * 113.61897 * 105.46640 * 15 14 4 29 29 H 1.08997 * 113.53348 * 270.81196 * 16 15 14 30 30 H 1.08996 * 113.66553 * 139.93042 * 16 15 14 31 31 H 1.09006 * 113.62082 * 254.53119 * 17 14 4 32 32 H 1.09006 * 113.61858 * 25.35224 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.9125 2.4760 1.0358 6 6 5.0018 2.3377 2.0679 7 1 5.0126 1.4851 2.7307 8 6 5.9847 3.2997 2.1662 9 7 5.9718 4.3377 1.3587 10 14 7.3344 3.1287 3.4460 11 1 8.4755 2.3769 2.8647 12 1 7.7926 4.4776 3.8655 13 1 6.8082 2.3957 4.6255 14 6 2.2711 1.3471 2.4120 15 6 3.0843 0.7822 3.5886 16 6 1.7824 0.1096 4.0608 17 6 1.3202 0.1526 2.5947 18 1 -0.5401 -0.9353 0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.8500 -0.9353 0.0004 21 1 2.6213 1.4026 -0.9314 22 1 1.3585 2.1317 0.0896 23 1 4.3562 2.5012 0.0405 24 1 3.3608 3.3996 1.2112 25 1 6.6634 5.0143 1.4274 26 1 1.8076 2.3106 2.6243 27 1 3.8563 0.0748 3.2861 28 1 3.4539 1.5474 4.2712 29 1 1.1857 0.7346 4.7252 30 1 1.9259 -0.9007 4.4440 31 1 0.2677 0.4101 2.4761 32 1 1.6082 -0.7270 2.0188 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388515552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 28.131034 kcal Electronic energy + Delta-G solvation = -12677.718527 eV Core-core repulsion = 10638.900463 eV Total energy + Delta-G solvation = -2038.818064 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36187 -36.49171 -35.20383 -33.58075 -29.20041 -26.62415 -26.14766 -25.28304 -22.45146 -20.79902 -20.06976 -18.42975 -16.92806 -16.59081 -16.30987 -15.57751 -15.35472 -14.77006 -14.10262 -13.78935 -13.49461 -13.18113 -12.98957 -12.79545 -12.46928 -12.35951 -12.19059 -12.05037 -11.49833 -11.26447 -11.13607 -10.83196 -10.54762 -9.85953 -9.04452 -8.17781 -6.25689 1.40090 1.41663 1.48808 1.52940 2.41530 3.14901 3.37370 3.87389 3.98421 4.09870 4.21756 4.24361 4.30930 4.63135 4.76957 4.80389 4.93418 5.06527 5.08627 5.15002 5.17187 5.20354 5.33068 5.52999 5.66236 5.72177 5.78594 5.93612 6.09980 6.43297 6.68328 6.91802 7.43377 8.94219 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043932 B = 0.011150 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.201649 B = 2510.668883 C = 3003.119044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 C 0.074 3.926 4 N -0.528 5.528 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.081 0.919 8 C -0.004 4.004 9 N -0.940 5.940 10 Si 0.965 3.035 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.058 3.942 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.111 4.111 18 H 0.122 0.878 19 H 0.090 0.910 20 H 0.116 0.884 21 H 0.064 0.936 22 H 0.020 0.980 23 H 0.000 1.000 24 H -0.046 1.046 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 -9.097 2.323 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.151 4.151 3 C -0.053 4.053 4 N -0.252 5.252 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.099 0.901 8 C -0.201 4.201 9 N -0.582 5.582 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.185 1.185 14 C -0.050 4.050 15 C -0.153 4.153 16 C -0.174 4.174 17 C -0.148 4.148 18 H 0.140 0.860 19 H 0.109 0.891 20 H 0.134 0.866 21 H 0.082 0.918 22 H 0.038 0.962 23 H 0.018 0.982 24 H -0.028 1.028 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.269 -9.358 2.263 13.365 hybrid contribution 0.601 1.552 0.191 1.675 sum -8.669 -7.806 2.455 11.921 Atomic orbital electron populations 1.23867 0.94958 1.02490 1.01346 1.22675 0.95936 0.97168 0.99357 1.21231 0.94092 0.95569 0.94426 1.62359 1.17628 1.43655 1.01550 1.19405 0.90874 0.85778 0.96018 1.21745 1.08762 1.07455 1.17401 0.90094 1.25950 1.00746 0.94955 0.98479 1.70111 1.35648 1.12239 1.40182 0.85440 0.78971 0.77308 0.79312 1.19930 1.21104 1.18500 1.23008 0.95598 0.96328 0.90101 1.22873 0.96974 0.99197 0.96257 1.22881 0.96495 1.01401 0.96596 1.23234 0.97825 0.97575 0.96159 0.86030 0.89148 0.86625 0.91777 0.96199 0.98221 1.02826 0.92982 0.95293 0.90759 0.93801 0.89848 0.89736 0.90901 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.32 12.63 67.78 0.86 -3.47 16 2 C -0.13 -3.78 6.36 25.65 0.16 -3.62 16 3 C 0.07 2.79 5.40 85.56 0.46 3.25 16 4 N -0.53 -23.51 4.55 -876.98 -3.99 -27.50 16 5 C 0.21 11.38 4.72 85.55 0.40 11.78 16 6 C -0.52 -29.51 8.33 25.60 0.21 -29.29 16 7 H 0.08 4.43 4.97 -2.91 -0.01 4.42 16 8 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 9 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 10 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 C 0.06 2.31 3.08 45.44 0.14 2.45 16 15 C -0.12 -4.36 5.44 31.18 0.17 -4.19 16 16 C -0.14 -3.80 8.09 31.18 0.25 -3.54 16 17 C -0.11 -3.24 5.30 31.12 0.16 -3.08 16 18 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 19 H 0.09 2.08 7.84 -2.91 -0.02 2.06 16 20 H 0.12 3.16 7.77 -2.91 -0.02 3.13 16 21 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 22 H 0.02 0.75 7.77 -2.39 -0.02 0.73 16 23 H 0.00 -0.02 7.93 -2.39 -0.02 -0.04 16 24 H -0.05 -2.79 8.10 -2.38 -0.02 -2.81 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.03 1.26 8.12 -2.38 -0.02 1.24 16 27 H 0.07 2.98 7.35 -2.39 -0.02 2.96 16 28 H 0.04 1.79 8.05 -2.39 -0.02 1.77 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.90 7.19 -2.38 -0.02 1.88 16 32 H 0.10 2.72 6.10 -2.38 -0.01 2.71 16 Total: -1.00 -64.21 255.29 2.67 -61.54 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.06 Total: 6.22 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.29 Total: -29.49 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -3.71 Total: -85.36 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.21 2.67 -61.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388515552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.668 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds