Wall clock time and date at job start Mon Mar 30 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 N 1.46907 * 109.47113 * 180.02562 * 4 3 2 6 6 C 1.48525 * 110.99873 * 52.60280 * 5 4 3 7 7 C 1.54944 * 103.22640 * 159.72099 * 6 5 4 8 8 C 1.54598 * 102.92205 * 322.58415 * 7 6 5 9 9 H 1.08998 * 110.30984 * 263.04440 * 8 7 6 10 10 C 1.50698 * 110.39202 * 140.91456 * 8 7 6 11 11 H 1.08003 * 119.99795 * 244.23451 * 10 8 7 12 12 C 1.37875 * 120.00008 * 64.23585 * 10 8 7 13 13 N 1.31512 * 119.99791 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 119.99928 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47141 * 60.00479 * 14 12 10 16 16 H 1.48499 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47640 * 300.00421 * 14 12 10 18 18 C 1.47903 * 110.99824 * 170.00182 * 5 4 3 19 19 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 20 20 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 21 21 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 22 22 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 23 23 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 24 24 H 1.09007 * 109.47145 * 300.00092 * 4 3 2 25 25 H 1.09001 * 109.47134 * 59.99947 * 4 3 2 26 26 H 1.09001 * 110.66839 * 278.15425 * 6 5 4 27 27 H 1.08996 * 110.67196 * 41.28790 * 6 5 4 28 28 H 1.08994 * 110.72383 * 204.22611 * 7 6 5 29 29 H 1.09001 * 110.87538 * 81.01346 * 7 6 5 30 30 H 0.97001 * 119.99351 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.91745 * 333.50546 * 18 5 4 32 32 H 1.08994 * 109.92181 * 94.60341 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 7 3.7740 2.6027 1.1780 6 6 2.8397 3.7562 1.1271 7 6 3.6988 4.9320 1.6564 8 6 4.5458 4.2688 2.7667 9 1 4.0881 4.4348 3.7419 10 6 5.9513 4.8122 2.7502 11 1 6.7802 4.1590 2.5204 12 6 6.1791 6.1432 3.0285 13 7 5.1698 6.9384 3.3089 14 14 7.9213 6.8167 3.0088 15 1 8.5102 6.6267 1.6588 16 1 7.8961 8.2645 3.3379 17 1 8.7427 6.0945 4.0132 18 6 4.5495 2.7668 2.4267 19 1 -0.5401 0.9353 0.0045 20 1 -0.5400 -0.9353 -0.0045 21 1 1.8500 -0.9353 -0.0046 22 1 2.6173 1.4049 -0.9334 23 1 1.3589 2.1314 0.0945 24 1 2.4859 1.2304 2.1111 25 1 3.7444 0.5039 1.0831 26 1 2.5176 3.9455 0.1031 27 1 1.9809 3.5847 1.7760 28 1 3.0656 5.7163 2.0709 29 1 4.3387 5.3306 0.8692 30 1 5.3302 7.8747 3.5051 31 1 4.0798 2.2025 3.2324 32 1 5.5718 2.4194 2.2773 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:42 Heat of formation + Delta-G solvation = -6.163805 kcal Electronic energy + Delta-G solvation = -12247.768236 eV Core-core repulsion = 10207.463036 eV Total energy + Delta-G solvation = -2040.305200 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.87169 -36.44378 -34.76608 -32.42529 -30.00851 -29.00750 -26.16615 -23.94385 -21.60126 -21.31052 -20.37122 -18.58226 -16.81491 -16.65033 -16.34436 -15.57474 -15.31690 -14.50825 -14.15747 -13.80931 -13.60281 -13.34504 -12.97721 -12.62112 -12.48188 -12.38090 -12.01964 -11.83547 -11.78820 -11.51978 -11.19103 -10.83984 -10.49250 -10.18065 -9.24279 -8.12587 -6.21546 1.42549 1.43131 1.44528 1.51981 2.44566 3.16390 3.22498 3.92700 4.15470 4.22895 4.26079 4.38923 4.49783 4.51446 4.59797 4.71346 4.87140 4.95670 5.02404 5.11561 5.22086 5.24666 5.36215 5.54919 5.71674 5.77173 5.84558 5.92412 6.16448 6.30468 6.39212 6.86528 7.45212 8.97083 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.090727 B = 0.007184 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.543809 B = 3896.388215 C = 4040.319314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.089 4.089 4 C 0.052 3.948 5 N -0.526 5.526 6 C 0.044 3.956 7 C -0.087 4.087 8 C 0.029 3.971 9 H -0.001 1.001 10 C -0.527 4.527 11 H 0.054 0.946 12 C 0.011 3.989 13 N -0.922 5.922 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.055 3.945 19 H 0.094 0.906 20 H 0.113 0.887 21 H 0.120 0.880 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.028 0.972 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.031 0.969 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 -10.391 -5.376 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.177 4.177 3 C -0.126 4.126 4 C -0.076 4.076 5 N -0.251 5.251 6 C -0.084 4.084 7 C -0.125 4.125 8 C 0.010 3.990 9 H 0.017 0.983 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.782 3.218 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.073 4.073 19 H 0.113 0.887 20 H 0.131 0.869 21 H 0.138 0.862 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.333 -10.233 -5.779 13.350 hybrid contribution 0.346 0.705 0.980 1.256 sum -5.987 -9.528 -4.798 12.233 Atomic orbital electron populations 1.24015 0.95780 1.02545 1.00776 1.22972 0.96324 0.98151 1.00221 1.20764 0.97407 0.96062 0.98403 1.22297 0.95722 0.92203 0.97379 1.64770 1.22327 1.02306 1.35681 1.23205 0.93799 0.90984 1.00408 1.22193 0.96707 0.95744 0.97905 1.19490 0.95288 0.90688 0.93498 0.98304 1.21493 0.93062 0.94813 1.47189 0.92781 1.25771 1.00794 0.97409 0.94772 1.70085 1.32254 1.05478 1.48288 0.85637 0.80323 0.77098 0.78760 1.19684 1.20955 1.19512 1.22855 0.97751 0.97294 0.89382 0.88737 0.86895 0.86248 0.90425 0.91754 0.95424 0.90236 0.89684 0.94303 0.94196 0.94368 0.93055 0.95104 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.57 14.32 67.79 0.97 -2.60 16 2 C -0.16 -3.25 9.52 25.65 0.24 -3.00 16 3 C -0.09 -2.22 5.32 29.85 0.16 -2.06 16 4 C 0.05 1.56 5.01 86.30 0.43 1.99 16 5 N -0.53 -20.17 5.40 -882.99 -4.76 -24.93 16 6 C 0.04 1.68 5.10 86.65 0.44 2.12 16 7 C -0.09 -4.23 5.75 31.80 0.18 -4.04 16 8 C 0.03 1.53 2.87 -10.66 -0.03 1.50 16 9 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 10 C -0.53 -29.92 8.38 25.60 0.21 -29.71 16 11 H 0.05 3.01 7.35 -2.91 -0.02 2.99 16 12 C 0.01 0.63 5.34 84.65 0.45 1.08 16 13 N -0.92 -54.59 12.63 21.45 0.27 -54.32 16 14 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 C 0.05 2.39 6.34 86.45 0.55 2.94 16 19 H 0.09 1.74 7.84 -2.91 -0.02 1.71 16 20 H 0.11 1.65 8.06 -2.91 -0.02 1.62 16 21 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 1.64 6.45 -2.39 -0.02 1.63 16 24 H 0.03 0.84 7.81 -2.38 -0.02 0.82 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 2.92 7.66 -2.39 -0.02 2.90 16 27 H 0.04 1.42 8.00 -2.39 -0.02 1.40 16 28 H 0.04 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.04 1.99 7.86 -2.39 -0.02 1.98 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 32 H 0.06 2.84 7.40 -2.39 -0.02 2.82 16 Total: -1.00 -60.82 261.74 2.20 -58.62 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.06 Total: 5.96 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 3.62 Total: -31.79 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -4.49 Total: -79.25 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.82 2.20 -58.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.456 kcal (2) G-P(sol) polarization free energy of solvation -60.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds