Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99534 * 2 1 4 4 C 1.53001 * 109.46554 * 125.00079 * 3 2 1 5 5 N 1.46900 * 109.46827 * 185.14374 * 4 3 2 6 6 C 1.47902 * 110.99719 * 184.28979 * 5 4 3 7 7 C 1.53995 * 107.05595 * 145.84571 * 6 5 4 8 8 C 1.54601 * 105.13941 * 358.77389 * 7 6 5 9 9 H 1.08996 * 110.71986 * 96.58149 * 8 7 6 10 10 C 1.50697 * 110.72051 * 219.68536 * 8 7 6 11 11 H 1.08000 * 120.00114 * 116.14791 * 10 8 7 12 12 C 1.37878 * 120.00283 * 296.14350 * 10 8 7 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00306 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47576 * 270.00612 * 14 12 10 16 16 H 1.48497 * 109.47342 * 150.00036 * 14 12 10 17 17 H 1.48508 * 109.46823 * 30.00389 * 14 12 10 18 18 C 1.48724 * 111.04323 * 301.86695 * 5 4 3 19 19 H 1.07996 * 120.00605 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.99453 * 179.97438 * 1 2 3 21 21 H 1.08002 * 120.00206 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.46973 * 5.00397 * 3 2 1 23 23 H 1.08991 * 109.47331 * 244.99807 * 3 2 1 24 24 H 1.08998 * 109.47366 * 65.14226 * 4 3 2 25 25 H 1.09005 * 109.47392 * 305.14201 * 4 3 2 26 26 H 1.08996 * 109.92199 * 26.49466 * 6 5 4 27 27 H 1.09003 * 109.91533 * 265.19299 * 6 5 4 28 28 H 1.09001 * 110.31034 * 239.85637 * 7 6 5 29 29 H 1.08999 * 110.30921 * 117.68694 * 7 6 5 30 30 H 0.96994 * 119.99440 * 359.97438 * 13 12 10 31 31 H 1.09005 * 110.83918 * 81.96476 * 18 5 4 32 32 H 1.08997 * 110.58569 * 318.77033 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3331 1.1817 5 7 3.6796 2.6511 1.2545 6 6 4.7017 2.6829 2.3230 7 6 5.8363 3.6030 1.8356 8 6 5.4071 4.0592 0.4221 9 1 4.9229 5.0348 0.4622 10 6 6.5907 4.0913 -0.5101 11 1 6.6238 3.4308 -1.3639 12 6 7.6315 4.9640 -0.2730 13 7 7.5916 5.7681 0.7670 14 14 9.0984 5.0043 -1.4289 15 1 10.1263 4.0415 -0.9582 16 1 9.6747 6.3728 -1.4498 17 1 8.6603 4.6307 -2.7978 18 6 4.3993 2.9641 -0.0088 19 1 -0.5401 0.9352 -0.0004 20 1 -0.5399 -0.9354 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 1.3585 2.1316 0.0896 23 1 2.6212 1.4028 -0.9313 24 1 3.7951 0.5639 1.0454 25 1 2.4886 1.1444 2.1058 26 1 5.0874 1.6786 2.4980 27 1 4.2680 3.0820 3.2399 28 1 6.7755 3.0520 1.7864 29 1 5.9358 4.4637 2.4969 30 1 6.8297 5.7473 1.3670 31 1 3.7116 3.3491 -0.7618 32 1 4.9235 2.0833 -0.3796 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592545.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = 6.135160 kcal Electronic energy + Delta-G solvation = -12279.104567 eV Core-core repulsion = 10239.332691 eV Total energy + Delta-G solvation = -2039.771877 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.35651 -35.31074 -33.24880 -30.70489 -28.39270 -27.22480 -24.29812 -22.41787 -20.02692 -19.98214 -19.35678 -16.86646 -15.32290 -15.29032 -14.61608 -13.90726 -13.75066 -13.32531 -12.91429 -12.44543 -12.09204 -11.62092 -11.30483 -11.01884 -10.92145 -10.85396 -10.51717 -10.32123 -10.08365 -9.81784 -9.40359 -9.27538 -8.47367 -8.32896 -7.82515 -6.32282 -4.04281 2.27024 3.43818 3.47312 3.63118 4.49036 4.58895 5.05852 5.16706 5.34762 5.41729 5.45467 5.67992 5.79118 5.87365 5.95724 6.05407 6.12776 6.25050 6.35343 6.42883 6.60723 6.70530 6.78908 6.94150 6.95981 7.27594 7.48242 7.63025 7.75132 8.28120 8.45400 8.90870 9.68352 11.06612 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061446 B = 0.007705 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.573984 B = 3632.953301 C = 3926.143214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.094 4.094 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.038 3.962 7 C -0.121 4.121 8 C 0.035 3.965 9 H 0.028 0.972 10 C -0.596 4.596 11 H 0.048 0.952 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 1.070 2.930 15 H -0.289 1.289 16 H -0.284 1.284 17 H -0.289 1.289 18 C 0.049 3.951 19 H 0.096 0.904 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.273 0.727 31 H 0.064 0.936 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -8.873 0.080 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.164 4.164 3 C -0.132 4.132 4 C -0.075 4.075 5 N -0.250 5.250 6 C -0.089 4.089 7 C -0.160 4.160 8 C 0.016 3.984 9 H 0.046 0.954 10 C -0.634 4.634 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.549 5.549 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.210 1.210 17 H -0.215 1.215 18 C -0.078 4.078 19 H 0.114 0.886 20 H 0.112 0.888 21 H 0.123 0.877 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.598 -7.750 -0.078 10.854 hybrid contribution -0.866 -1.536 0.190 1.774 sum -8.465 -9.287 0.111 12.566 Atomic orbital electron populations 1.23812 0.95927 1.01591 1.02474 1.22992 0.96035 0.98595 0.98741 1.20795 0.98421 0.95054 0.98887 1.22153 0.96437 0.90858 0.98038 1.64793 1.28422 1.26237 1.05562 1.22862 0.92778 0.98506 0.94795 1.22629 0.96157 0.97671 0.99536 1.19709 0.93567 0.93344 0.91806 0.95363 1.21957 1.04910 1.24389 1.12162 0.93322 1.25775 1.01064 0.92802 0.98798 1.70750 1.33158 1.37104 1.13851 0.83534 0.75250 0.76415 0.74966 1.21579 1.21000 1.21540 1.23267 0.95151 0.98743 0.90607 0.88574 0.88826 0.87693 0.90723 0.90807 0.95289 0.91521 0.95142 0.91862 0.92181 0.92798 0.91554 0.91746 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.32 29.01 0.42 -1.74 16 2 C -0.15 -1.74 9.52 -36.02 -0.34 -2.08 16 3 C -0.09 -1.34 5.34 -27.88 -0.15 -1.49 16 4 C 0.05 0.86 4.83 -3.82 -0.02 0.84 16 5 N -0.53 -10.24 5.35 -230.28 -1.23 -11.47 16 6 C 0.04 0.76 6.70 -2.75 -0.02 0.74 16 7 C -0.12 -2.85 5.47 -25.37 -0.14 -2.99 16 8 C 0.03 0.89 2.57 -89.91 -0.23 0.66 16 9 H 0.03 0.78 8.00 -51.93 -0.42 0.37 16 10 C -0.60 -16.75 8.40 -34.44 -0.29 -17.04 16 11 H 0.05 1.36 7.78 -52.49 -0.41 0.95 16 12 C 0.02 0.57 5.34 -17.82 -0.10 0.48 16 13 N -0.91 -27.43 13.45 55.43 0.75 -26.68 16 14 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.05 1.07 4.79 -1.79 -0.01 1.06 16 19 H 0.10 1.00 7.84 -52.49 -0.41 0.59 16 20 H 0.09 0.84 8.06 -52.48 -0.42 0.42 16 21 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 22 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 23 H 0.07 1.10 7.19 -51.93 -0.37 0.73 16 24 H 0.03 0.47 7.97 -51.93 -0.41 0.05 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.56 7.67 -51.93 -0.40 0.17 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 29 H 0.05 1.29 7.07 -51.93 -0.37 0.92 16 30 H 0.27 8.14 5.66 -40.82 -0.23 7.90 16 31 H 0.06 1.35 7.79 -51.93 -0.40 0.95 16 32 H 0.04 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -29.33 260.22 -7.66 -36.99 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.13 Total: -1.34 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.88 Total: -21.54 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.49 Total: -38.15 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.33 -7.66 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592545.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.122 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds