Wall clock time and date at job start Mon Mar 30 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99534 * 2 1 4 4 C 1.53001 * 109.46554 * 125.00079 * 3 2 1 5 5 N 1.46900 * 109.46827 * 185.14374 * 4 3 2 6 6 C 1.47902 * 110.99719 * 184.28979 * 5 4 3 7 7 C 1.53995 * 107.05595 * 145.84571 * 6 5 4 8 8 C 1.54601 * 105.13941 * 358.77389 * 7 6 5 9 9 H 1.08996 * 110.71986 * 96.58149 * 8 7 6 10 10 C 1.50697 * 110.72051 * 219.68536 * 8 7 6 11 11 H 1.08000 * 120.00114 * 116.14791 * 10 8 7 12 12 C 1.37878 * 120.00283 * 296.14350 * 10 8 7 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00306 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47576 * 270.00612 * 14 12 10 16 16 H 1.48497 * 109.47342 * 150.00036 * 14 12 10 17 17 H 1.48508 * 109.46823 * 30.00389 * 14 12 10 18 18 C 1.48724 * 111.04323 * 301.86695 * 5 4 3 19 19 H 1.07996 * 120.00605 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.99453 * 179.97438 * 1 2 3 21 21 H 1.08002 * 120.00206 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.46973 * 5.00397 * 3 2 1 23 23 H 1.08991 * 109.47331 * 244.99807 * 3 2 1 24 24 H 1.08998 * 109.47366 * 65.14226 * 4 3 2 25 25 H 1.09005 * 109.47392 * 305.14201 * 4 3 2 26 26 H 1.08996 * 109.92199 * 26.49466 * 6 5 4 27 27 H 1.09003 * 109.91533 * 265.19299 * 6 5 4 28 28 H 1.09001 * 110.31034 * 239.85637 * 7 6 5 29 29 H 1.08999 * 110.30921 * 117.68694 * 7 6 5 30 30 H 0.96994 * 119.99440 * 359.97438 * 13 12 10 31 31 H 1.09005 * 110.83918 * 81.96476 * 18 5 4 32 32 H 1.08997 * 110.58569 * 318.77033 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3331 1.1817 5 7 3.6796 2.6511 1.2545 6 6 4.7017 2.6829 2.3230 7 6 5.8363 3.6030 1.8356 8 6 5.4071 4.0592 0.4221 9 1 4.9229 5.0348 0.4622 10 6 6.5907 4.0913 -0.5101 11 1 6.6238 3.4308 -1.3639 12 6 7.6315 4.9640 -0.2730 13 7 7.5916 5.7681 0.7670 14 14 9.0984 5.0043 -1.4289 15 1 10.1263 4.0415 -0.9582 16 1 9.6747 6.3728 -1.4498 17 1 8.6603 4.6307 -2.7978 18 6 4.3993 2.9641 -0.0088 19 1 -0.5401 0.9352 -0.0004 20 1 -0.5399 -0.9354 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 1.3585 2.1316 0.0896 23 1 2.6212 1.4028 -0.9313 24 1 3.7951 0.5639 1.0454 25 1 2.4886 1.1444 2.1058 26 1 5.0874 1.6786 2.4980 27 1 4.2680 3.0820 3.2399 28 1 6.7755 3.0520 1.7864 29 1 5.9358 4.4637 2.4969 30 1 6.8297 5.7473 1.3670 31 1 3.7116 3.3491 -0.7618 32 1 4.9235 2.0833 -0.3796 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592545.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:44 Heat of formation + Delta-G solvation = -12.030591 kcal Electronic energy + Delta-G solvation = -12279.892293 eV Core-core repulsion = 10239.332691 eV Total energy + Delta-G solvation = -2040.559603 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00942 -36.61113 -35.04516 -32.30896 -30.19425 -28.64987 -26.32433 -23.89449 -21.65851 -21.58774 -20.56163 -18.94923 -16.96223 -16.37092 -16.27347 -15.63363 -15.34658 -14.85766 -14.24919 -14.08829 -13.79757 -13.32141 -12.94622 -12.67202 -12.43418 -12.29471 -11.96931 -11.95133 -11.74834 -11.65747 -11.33815 -10.59081 -10.48715 -10.21992 -9.39034 -8.59877 -6.32955 1.39727 1.53184 1.61777 1.79473 2.57304 3.08358 3.20995 3.87435 3.97924 4.05742 4.19220 4.24904 4.39321 4.44125 4.49341 4.61273 4.71274 4.83446 4.92897 5.02648 5.05197 5.13362 5.17536 5.33227 5.59697 5.70869 5.80664 5.90916 6.13868 6.17690 6.23448 6.65427 7.48223 8.79333 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061446 B = 0.007705 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.573984 B = 3632.953301 C = 3926.143214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C -0.089 4.089 4 C 0.054 3.946 5 N -0.531 5.531 6 C 0.046 3.954 7 C -0.113 4.113 8 C 0.021 3.979 9 H -0.002 1.002 10 C -0.609 4.609 11 H 0.045 0.955 12 C -0.029 4.029 13 N -0.937 5.937 14 Si 1.116 2.884 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.065 3.935 19 H 0.097 0.903 20 H 0.115 0.885 21 H 0.116 0.884 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 -10.445 -0.176 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C -0.126 4.126 4 C -0.074 4.074 5 N -0.255 5.255 6 C -0.082 4.082 7 C -0.152 4.152 8 C 0.002 3.998 9 H 0.016 0.984 10 C -0.648 4.648 11 H 0.064 0.936 12 C -0.228 4.228 13 N -0.574 5.574 14 Si 0.938 3.062 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.063 4.063 19 H 0.115 0.885 20 H 0.133 0.867 21 H 0.134 0.866 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.397 -9.343 -0.328 12.566 hybrid contribution -0.715 -1.050 0.283 1.301 sum -9.112 -10.393 -0.045 13.822 Atomic orbital electron populations 1.24031 0.95563 1.02697 1.00030 1.22908 0.96441 0.97749 1.00887 1.20705 0.97977 0.96425 0.97505 1.22268 0.96644 0.88753 0.99746 1.64797 1.27690 1.28912 1.04095 1.22802 0.91577 0.98413 0.95375 1.22418 0.96822 0.97717 0.98264 1.19713 0.93832 0.93284 0.92955 0.98429 1.22306 1.05853 1.24150 1.12443 0.93619 1.27221 1.03938 0.92189 0.99441 1.70865 1.33123 1.38522 1.14887 0.82936 0.72541 0.76746 0.73937 1.20021 1.20919 1.19683 1.22997 0.94362 0.97112 0.91790 0.88477 0.86727 0.86621 0.91229 0.92038 0.95070 0.89801 0.93471 0.89978 0.94241 0.94174 0.92763 0.91348 0.95036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.16 -3.44 9.52 25.65 0.24 -3.20 16 3 C -0.09 -2.36 5.34 29.85 0.16 -2.20 16 4 C 0.05 1.60 4.83 86.30 0.42 2.02 16 5 N -0.53 -19.96 5.35 -882.48 -4.72 -24.68 16 6 C 0.05 1.76 6.70 86.45 0.58 2.34 16 7 C -0.11 -5.42 5.47 31.48 0.17 -5.25 16 8 C 0.02 1.11 2.57 -10.33 -0.03 1.09 16 9 H 0.00 -0.14 8.00 -2.39 -0.02 -0.16 16 10 C -0.61 -34.76 8.40 25.60 0.22 -34.54 16 11 H 0.05 2.57 7.78 -2.91 -0.02 2.55 16 12 C -0.03 -1.69 5.34 84.65 0.45 -1.24 16 13 N -0.94 -57.50 13.45 21.45 0.29 -57.21 16 14 Si 1.12 50.53 29.90 68.60 2.05 52.58 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 C 0.06 2.80 4.79 86.61 0.41 3.22 16 19 H 0.10 1.76 7.84 -2.91 -0.02 1.74 16 20 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 21 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 22 H 0.07 1.90 7.79 -2.39 -0.02 1.88 16 23 H 0.06 1.77 7.19 -2.39 -0.02 1.75 16 24 H 0.03 0.93 7.97 -2.39 -0.02 0.91 16 25 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.05 1.65 7.67 -2.39 -0.02 1.63 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 28 H 0.04 2.00 7.84 -2.39 -0.02 1.98 16 29 H 0.04 1.98 7.07 -2.39 -0.02 1.96 16 30 H 0.26 16.18 5.66 -92.71 -0.52 15.66 16 31 H 0.07 2.86 7.79 -2.38 -0.02 2.84 16 32 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 Total: -1.00 -62.87 260.22 2.52 -60.35 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.30 Total: 9.17 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.60 Total: -40.22 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -4.43 Total: -81.89 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -62.87 2.52 -60.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592545.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.318 kcal (2) G-P(sol) polarization free energy of solvation -62.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds