Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30999 * 120.00308 * 2 1 4 4 C 1.50702 * 119.99876 * 0.02562 * 3 2 1 5 5 N 1.46896 * 109.47489 * 124.99409 * 4 3 2 6 6 C 1.47903 * 110.99514 * 69.87681 * 5 4 3 7 7 C 1.53992 * 107.05732 * 145.84705 * 6 5 4 8 8 C 1.54600 * 105.14075 * 358.76825 * 7 6 5 9 9 H 1.09004 * 110.71948 * 96.57972 * 8 7 6 10 10 C 1.50695 * 110.72835 * 219.68977 * 8 7 6 11 11 H 1.07999 * 120.00538 * 118.54268 * 10 8 7 12 12 C 1.37881 * 119.99661 * 298.54616 * 10 8 7 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.48526 * 111.00022 * 187.27011 * 5 4 3 19 19 H 1.08994 * 109.46881 * 59.99937 * 1 2 3 20 20 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47184 * 299.99354 * 1 2 3 22 22 H 1.08003 * 120.00341 * 180.02562 * 2 1 3 23 23 H 1.08003 * 120.00398 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46707 * 4.99239 * 4 3 2 25 25 H 1.08995 * 109.46708 * 245.00067 * 4 3 2 26 26 H 1.08991 * 109.92083 * 26.48757 * 6 5 4 27 27 H 1.09001 * 109.91095 * 265.19308 * 6 5 4 28 28 H 1.09001 * 110.30857 * 239.85511 * 7 6 5 29 29 H 1.08995 * 110.31707 * 117.68507 * 7 6 5 30 30 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 31 31 H 1.08998 * 110.67041 * 81.84693 * 18 5 4 32 32 H 1.09007 * 110.67135 * 318.71618 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 0.0006 5 7 1.8520 3.2606 1.1351 6 6 3.2342 3.7454 0.9302 7 6 3.3206 5.1456 1.5655 8 6 1.9017 5.4305 2.1093 9 1 1.8394 5.1878 3.1701 10 6 1.5172 6.8677 1.8695 11 1 0.6636 7.1024 1.2509 12 6 2.2554 7.8831 2.4398 13 7 3.2947 7.5973 3.1934 14 14 1.7793 9.6647 2.1420 15 1 0.8256 10.1044 3.1920 16 1 1.1390 9.7896 0.8080 17 1 2.9948 10.5165 2.1893 18 6 1.0120 4.4778 1.2718 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 2.0470 -0.9353 -0.0004 23 1 3.2421 1.1345 0.0004 24 1 0.3403 2.2423 0.0904 25 1 1.6027 2.9715 -0.9307 26 1 3.4517 3.8073 -0.1360 27 1 3.9397 3.0725 1.4174 28 1 3.5932 5.8860 0.8135 29 1 4.0452 5.1476 2.3797 30 1 3.5416 6.6721 3.3483 31 1 0.0873 4.2497 1.8020 32 1 0.7993 4.9104 0.2941 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397645651.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = 7.032406 kcal Electronic energy + Delta-G solvation = -12318.908253 eV Core-core repulsion = 10279.175284 eV Total energy + Delta-G solvation = -2039.732969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.37420 -35.53313 -33.14069 -30.16529 -28.30243 -27.23151 -24.66107 -23.62952 -20.35808 -19.79153 -18.03991 -16.79754 -15.77393 -15.19558 -14.28339 -13.89318 -13.64758 -13.21006 -12.88209 -12.71245 -11.87303 -11.68208 -11.64268 -11.60443 -10.90856 -10.53317 -10.44314 -10.43631 -10.09925 -9.78678 -9.42733 -8.93850 -8.45984 -8.33100 -7.80374 -6.31861 -4.04429 2.33960 3.44111 3.47208 3.62952 4.52779 4.75531 5.00579 5.21639 5.38586 5.42371 5.54142 5.69153 5.70847 5.85476 5.89374 5.97289 6.08809 6.19137 6.30321 6.41701 6.68940 6.74433 6.93220 6.94240 6.98602 7.27900 7.48307 7.63231 7.75158 8.27789 8.45201 8.90894 9.68251 11.06640 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079694 B = 0.007560 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.259147 B = 3703.037695 C = 3900.674369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.171 4.171 3 C -0.138 4.138 4 C 0.067 3.933 5 N -0.518 5.518 6 C 0.038 3.962 7 C -0.121 4.121 8 C 0.036 3.964 9 H 0.028 0.972 10 C -0.596 4.596 11 H 0.049 0.951 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 1.070 2.930 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.048 3.952 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.273 0.727 31 H 0.064 0.936 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -10.288 -6.233 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.190 4.190 3 C -0.157 4.157 4 C -0.061 4.061 5 N -0.242 5.242 6 C -0.090 4.090 7 C -0.160 4.160 8 C 0.017 3.983 9 H 0.046 0.954 10 C -0.635 4.635 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.549 5.549 14 Si 0.899 3.101 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.211 1.211 18 C -0.079 4.079 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.123 0.877 23 H 0.123 0.877 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.514 -9.051 -5.423 10.846 hybrid contribution -0.239 -1.192 -1.152 1.674 sum -2.753 -10.242 -6.575 12.479 Atomic orbital electron populations 1.20836 0.93559 1.01606 1.02020 1.22681 0.96150 0.97482 1.02655 1.22759 0.99465 0.94116 0.99316 1.21431 0.99237 0.92615 0.92857 1.64821 1.03123 1.18499 1.37775 1.22903 0.90533 0.97516 0.98057 1.22631 1.00773 0.93000 0.99595 1.19698 0.89761 0.94218 0.94609 0.95400 1.21960 1.16042 0.90757 1.34728 0.93287 1.25778 0.93999 1.05041 0.93627 1.70753 1.25511 1.22953 1.35721 0.83531 0.75851 0.74901 0.75855 1.21455 1.21604 1.21054 1.23253 0.96660 0.88807 0.99174 0.92028 0.92631 0.91350 0.87672 0.87699 0.90391 0.94402 0.95114 0.91966 0.92145 0.92773 0.91467 0.91787 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.65 36.00 0.31 -1.06 16 2 C -0.17 -2.12 10.26 -36.03 -0.37 -2.49 16 3 C -0.14 -1.98 9.35 -36.02 -0.34 -2.32 16 4 C 0.07 1.08 5.01 -4.98 -0.02 1.06 16 5 N -0.52 -10.20 5.26 -231.90 -1.22 -11.42 16 6 C 0.04 0.75 6.05 -2.75 -0.02 0.74 16 7 C -0.12 -2.87 5.34 -25.37 -0.14 -3.00 16 8 C 0.04 0.93 2.62 -89.91 -0.24 0.69 16 9 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 10 C -0.60 -16.80 8.42 -34.44 -0.29 -17.09 16 11 H 0.05 1.37 7.78 -52.49 -0.41 0.96 16 12 C 0.02 0.57 5.33 -17.82 -0.10 0.48 16 13 N -0.91 -27.48 13.42 55.43 0.74 -26.74 16 14 Si 1.07 25.23 29.90 -169.99 -5.08 20.14 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.05 1.05 5.95 -1.90 -0.01 1.04 16 19 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 20 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 21 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 22 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 23 H 0.10 1.47 7.89 -52.48 -0.41 1.06 16 24 H 0.08 1.19 5.77 -51.93 -0.30 0.89 16 25 H 0.04 0.62 7.82 -51.93 -0.41 0.22 16 26 H 0.03 0.58 7.57 -51.93 -0.39 0.18 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.52 7.84 -51.93 -0.41 1.11 16 29 H 0.05 1.30 6.97 -51.93 -0.36 0.94 16 30 H 0.27 8.16 5.53 -40.82 -0.23 7.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.80 7.92 -51.93 -0.41 0.39 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -29.57 258.04 -7.91 -37.48 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.04 Total: -1.40 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.20 Total: -21.95 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.47 Total: -38.16 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.57 -7.91 -37.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645651.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.511 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds