Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30999 * 120.00308 * 2 1 4 4 C 1.50702 * 119.99876 * 0.02562 * 3 2 1 5 5 N 1.46896 * 109.47489 * 124.99409 * 4 3 2 6 6 C 1.47903 * 110.99514 * 69.87681 * 5 4 3 7 7 C 1.53992 * 107.05732 * 145.84705 * 6 5 4 8 8 C 1.54600 * 105.14075 * 358.76825 * 7 6 5 9 9 H 1.09004 * 110.71948 * 96.57972 * 8 7 6 10 10 C 1.50695 * 110.72835 * 219.68977 * 8 7 6 11 11 H 1.07999 * 120.00538 * 118.54268 * 10 8 7 12 12 C 1.37881 * 119.99661 * 298.54616 * 10 8 7 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.48526 * 111.00022 * 187.27011 * 5 4 3 19 19 H 1.08994 * 109.46881 * 59.99937 * 1 2 3 20 20 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47184 * 299.99354 * 1 2 3 22 22 H 1.08003 * 120.00341 * 180.02562 * 2 1 3 23 23 H 1.08003 * 120.00398 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46707 * 4.99239 * 4 3 2 25 25 H 1.08995 * 109.46708 * 245.00067 * 4 3 2 26 26 H 1.08991 * 109.92083 * 26.48757 * 6 5 4 27 27 H 1.09001 * 109.91095 * 265.19308 * 6 5 4 28 28 H 1.09001 * 110.30857 * 239.85511 * 7 6 5 29 29 H 1.08995 * 110.31707 * 117.68507 * 7 6 5 30 30 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 31 31 H 1.08998 * 110.67041 * 81.84693 * 18 5 4 32 32 H 1.09007 * 110.67135 * 318.71618 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 0.0006 5 7 1.8520 3.2606 1.1351 6 6 3.2342 3.7454 0.9302 7 6 3.3206 5.1456 1.5655 8 6 1.9017 5.4305 2.1093 9 1 1.8394 5.1878 3.1701 10 6 1.5172 6.8677 1.8695 11 1 0.6636 7.1024 1.2509 12 6 2.2554 7.8831 2.4398 13 7 3.2947 7.5973 3.1934 14 14 1.7793 9.6647 2.1420 15 1 0.8256 10.1044 3.1920 16 1 1.1390 9.7896 0.8080 17 1 2.9948 10.5165 2.1893 18 6 1.0120 4.4778 1.2718 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 2.0470 -0.9353 -0.0004 23 1 3.2421 1.1345 0.0004 24 1 0.3403 2.2423 0.0904 25 1 1.6027 2.9715 -0.9307 26 1 3.4517 3.8073 -0.1360 27 1 3.9397 3.0725 1.4174 28 1 3.5932 5.8860 0.8135 29 1 4.0452 5.1476 2.3797 30 1 3.5416 6.6721 3.3483 31 1 0.0873 4.2497 1.8020 32 1 0.7993 4.9104 0.2941 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397645651.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = -11.249070 kcal Electronic energy + Delta-G solvation = -12319.700997 eV Core-core repulsion = 10279.175284 eV Total energy + Delta-G solvation = -2040.525713 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02225 -36.85110 -35.01267 -31.86900 -30.10284 -28.44191 -26.32121 -25.37243 -22.02138 -21.67272 -19.36070 -18.69325 -17.15281 -16.77535 -15.90062 -15.67925 -15.13668 -14.62580 -14.30039 -14.14672 -13.61128 -13.43701 -13.19364 -12.79399 -12.57113 -12.31394 -12.07120 -11.92385 -11.74061 -11.66770 -11.30084 -10.60203 -10.49862 -10.00202 -9.34276 -8.59589 -6.33350 1.29851 1.53342 1.61961 1.79413 2.57438 3.18241 3.24525 3.84114 3.92680 4.14362 4.22770 4.31353 4.41034 4.44594 4.55653 4.63596 4.70783 4.82963 4.83638 5.01938 5.08998 5.10008 5.17247 5.32320 5.59111 5.72946 5.80394 5.93041 6.14148 6.16636 6.23088 6.65223 7.48028 8.79286 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079694 B = 0.007560 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.259147 B = 3703.037695 C = 3900.674369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.068 3.932 5 N -0.523 5.523 6 C 0.048 3.952 7 C -0.113 4.113 8 C 0.023 3.977 9 H -0.002 1.002 10 C -0.610 4.610 11 H 0.047 0.953 12 C -0.030 4.030 13 N -0.938 5.938 14 Si 1.117 2.883 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.284 1.284 18 C 0.060 3.940 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.126 0.874 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -11.337 -7.306 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.169 4.169 3 C -0.184 4.184 4 C -0.059 4.059 5 N -0.247 5.247 6 C -0.079 4.079 7 C -0.152 4.152 8 C 0.004 3.996 9 H 0.016 0.984 10 C -0.648 4.648 11 H 0.065 0.935 12 C -0.228 4.228 13 N -0.575 5.575 14 Si 0.939 3.061 15 H -0.200 1.200 16 H -0.197 1.197 17 H -0.210 1.210 18 C -0.068 4.068 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.077 0.923 22 H 0.144 0.856 23 H 0.124 0.876 24 H 0.106 0.894 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.273 -10.132 -6.507 12.478 hybrid contribution -0.045 -0.966 -0.812 1.263 sum -3.318 -11.099 -7.319 13.702 Atomic orbital electron populations 1.20907 0.92710 1.03026 1.01813 1.23010 0.96952 0.97656 0.99235 1.22651 0.99567 0.93629 1.02589 1.21487 1.00147 0.92947 0.91313 1.64820 1.02434 1.17374 1.40037 1.22802 0.91312 0.95190 0.98642 1.22422 0.99122 0.95051 0.98598 1.19690 0.92027 0.94231 0.93615 0.98399 1.22314 1.15833 0.92336 1.34362 0.93511 1.27235 0.93411 1.09324 0.92851 1.70866 1.26899 1.22334 1.37405 0.82929 0.75969 0.70224 0.76977 1.19957 1.19693 1.20955 1.23024 0.96473 0.89039 0.98216 0.91422 0.90519 0.92276 0.85579 0.87576 0.89419 0.94539 0.93684 0.90325 0.94281 0.94188 0.92646 0.91183 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.65 71.23 0.62 -1.82 16 2 C -0.15 -3.23 10.26 25.65 0.26 -2.97 16 3 C -0.17 -4.35 9.35 25.65 0.24 -4.11 16 4 C 0.07 2.09 5.01 85.56 0.43 2.52 16 5 N -0.52 -19.99 5.26 -887.59 -4.66 -24.66 16 6 C 0.05 1.88 6.05 86.45 0.52 2.41 16 7 C -0.11 -5.46 5.34 31.47 0.17 -5.29 16 8 C 0.02 1.23 2.62 -10.33 -0.03 1.20 16 9 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 10 C -0.61 -34.86 8.42 25.60 0.22 -34.65 16 11 H 0.05 2.63 7.78 -2.91 -0.02 2.60 16 12 C -0.03 -1.71 5.33 84.65 0.45 -1.26 16 13 N -0.94 -57.65 13.42 21.45 0.29 -57.36 16 14 Si 1.12 50.56 29.90 68.60 2.05 52.62 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 C 0.06 2.61 5.95 86.65 0.52 3.13 16 19 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 20 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 21 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 22 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 23 H 0.11 2.74 7.89 -2.91 -0.02 2.71 16 24 H 0.09 2.49 5.77 -2.38 -0.01 2.48 16 25 H 0.04 1.13 7.82 -2.39 -0.02 1.11 16 26 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 27 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.04 2.00 7.84 -2.39 -0.02 1.99 16 29 H 0.04 1.99 6.97 -2.39 -0.02 1.97 16 30 H 0.26 16.25 5.53 -92.71 -0.51 15.74 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.03 1.47 7.92 -2.38 -0.02 1.45 16 Total: -1.00 -63.41 258.04 2.39 -61.02 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.32 Total: 9.23 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 3.39 Total: -40.85 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -4.38 Total: -82.02 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.62 kcal Total: -63.41 2.39 -61.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645651.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.769 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds