Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30996 * 119.99888 * 2 1 4 4 C 1.50698 * 120.00395 * 359.72103 * 3 2 1 5 5 N 1.46899 * 109.47111 * 125.27319 * 4 3 2 6 6 C 1.47906 * 110.99618 * 69.87743 * 5 4 3 7 7 C 1.53993 * 107.05912 * 214.15368 * 6 5 4 8 8 C 1.54594 * 105.13701 * 1.22513 * 7 6 5 9 9 H 1.08998 * 110.72985 * 263.41723 * 8 7 6 10 10 C 1.50708 * 110.72025 * 140.31458 * 8 7 6 11 11 H 1.08002 * 120.00164 * 245.31667 * 10 8 7 12 12 C 1.37880 * 119.99819 * 65.31778 * 10 8 7 13 13 N 1.31515 * 119.99888 * 8.39490 * 12 10 8 14 14 Si 1.86800 * 119.99654 * 188.39958 * 12 10 8 15 15 H 1.48495 * 109.47551 * 94.97871 * 14 12 10 16 16 H 1.48507 * 109.46658 * 214.98063 * 14 12 10 17 17 H 1.48497 * 109.47243 * 334.97412 * 14 12 10 18 18 C 1.48534 * 111.00263 * 312.48620 * 5 4 3 19 19 H 1.09008 * 109.46953 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46735 * 299.99717 * 1 2 3 21 21 H 1.08993 * 109.47074 * 60.00115 * 1 2 3 22 22 H 1.08006 * 119.99790 * 179.97438 * 2 1 3 23 23 H 1.08001 * 119.99565 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47406 * 245.28234 * 4 3 2 25 25 H 1.09008 * 109.46350 * 5.27822 * 4 3 2 26 26 H 1.09003 * 109.91555 * 333.51283 * 6 5 4 27 27 H 1.09001 * 109.91384 * 94.60123 * 6 5 4 28 28 H 1.08996 * 110.30898 * 120.14461 * 7 6 5 29 29 H 1.08995 * 110.30600 * 242.31249 * 7 6 5 30 30 H 0.96996 * 119.99407 * 180.02562 * 13 12 10 31 31 H 1.09002 * 110.65999 * 278.15254 * 18 5 4 32 32 H 1.08998 * 110.67046 * 41.28069 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 -0.0064 5 7 1.8517 3.2663 1.1242 6 6 3.2340 3.7501 0.9173 7 6 3.9053 3.8051 2.3021 8 6 2.8324 3.2954 3.2915 9 1 2.3043 4.1304 3.7518 10 6 3.4537 2.4143 4.3446 11 1 3.1950 1.3669 4.3938 12 6 4.3524 2.9455 5.2452 13 7 4.5436 4.2458 5.2942 14 14 5.2985 1.8182 6.3957 15 1 6.6221 1.5021 5.8014 16 1 5.4919 2.4950 7.7034 17 1 4.5335 0.5615 6.5972 18 6 1.8833 2.4759 2.3815 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 2.0470 -0.9354 0.0004 23 1 3.2420 1.1344 -0.0004 24 1 1.6030 2.9668 -0.9403 25 1 0.3403 2.2427 0.0842 26 1 3.7754 3.0609 0.2692 27 1 3.2164 4.7439 0.4701 28 1 4.7800 3.1552 2.3246 29 1 4.1878 4.8294 2.5451 30 1 5.1762 4.6194 5.9276 31 1 0.8879 2.4130 2.8212 32 1 2.2885 1.4805 2.2001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397645652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = 12.158068 kcal Electronic energy + Delta-G solvation = -12533.145296 eV Core-core repulsion = 10493.634592 eV Total energy + Delta-G solvation = -2039.510704 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.48181 -35.12075 -32.79764 -30.33893 -28.10553 -27.11152 -25.12812 -23.48103 -20.27064 -19.47952 -17.97771 -16.46003 -15.58262 -14.82458 -14.49212 -13.98696 -13.35589 -13.15456 -13.09330 -12.24740 -12.06555 -11.68292 -11.32405 -11.11668 -10.85333 -10.67915 -10.64069 -10.43784 -10.21610 -9.61541 -9.15278 -8.87306 -8.67100 -8.33024 -7.66713 -6.00509 -4.01529 2.44467 3.30962 3.38321 3.41418 4.44522 4.87940 5.13399 5.29152 5.33119 5.53353 5.58017 5.76622 5.89534 5.94505 6.04952 6.06901 6.29970 6.37322 6.50962 6.62408 6.82685 6.91984 7.01786 7.16098 7.19606 7.58621 7.67950 7.79128 7.92426 8.07217 8.48952 9.01121 9.61563 11.09927 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.044303 B = 0.009941 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.866709 B = 2816.056268 C = 3191.784501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.167 4.167 3 C -0.179 4.179 4 C 0.067 3.933 5 N -0.517 5.517 6 C 0.032 3.968 7 C -0.108 4.108 8 C 0.051 3.949 9 H 0.040 0.960 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.039 3.961 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -4.781 -9.269 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.187 4.187 3 C -0.198 4.198 4 C -0.061 4.061 5 N -0.239 5.239 6 C -0.096 4.096 7 C -0.146 4.146 8 C 0.032 3.968 9 H 0.058 0.942 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.088 4.088 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.121 0.879 23 H 0.124 0.876 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.673 -4.174 -9.138 11.080 hybrid contribution 1.358 -1.326 0.538 1.972 sum -3.316 -5.500 -8.600 10.733 Atomic orbital electron populations 1.20834 0.93532 1.01625 1.01907 1.22697 0.96108 0.97625 1.02226 1.23497 1.00273 0.96096 0.99963 1.21534 0.99217 0.90044 0.95329 1.65015 1.22963 1.33460 1.02492 1.22953 0.88793 0.98555 0.99302 1.22377 0.99203 1.01128 0.91942 1.19543 0.90997 0.94740 0.91516 0.94215 1.21095 1.24929 0.95335 1.14001 0.92673 1.24964 0.97124 0.94823 0.96843 1.69994 1.35304 1.10319 1.36837 0.86663 0.80473 0.81049 0.80336 1.20797 1.21254 1.19885 1.23413 0.99943 0.96012 0.89384 0.92656 0.91410 0.91982 0.87943 0.87589 0.91119 0.90347 0.95149 0.92151 0.92949 0.92427 0.93065 0.92247 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.65 36.01 0.31 -1.15 16 2 C -0.17 -2.33 10.26 -36.02 -0.37 -2.70 16 3 C -0.18 -2.79 6.86 -36.03 -0.25 -3.04 16 4 C 0.07 1.07 5.73 -4.98 -0.03 1.04 16 5 N -0.52 -10.13 5.54 -231.89 -1.28 -11.42 16 6 C 0.03 0.63 6.46 -2.75 -0.02 0.61 16 7 C -0.11 -2.56 5.97 -25.38 -0.15 -2.71 16 8 C 0.05 1.31 2.86 -89.91 -0.26 1.06 16 9 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 10 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 11 H 0.06 1.52 7.79 -52.49 -0.41 1.11 16 12 C 0.06 1.81 5.29 -17.82 -0.09 1.72 16 13 N -0.89 -25.89 12.97 55.43 0.72 -25.17 16 14 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.04 0.86 5.73 -1.90 -0.01 0.85 16 19 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 20 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 21 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 22 H 0.10 1.33 8.06 -52.48 -0.42 0.90 16 23 H 0.11 1.74 7.10 -52.49 -0.37 1.37 16 24 H 0.07 1.03 8.08 -51.93 -0.42 0.62 16 25 H 0.08 1.17 5.80 -51.92 -0.30 0.87 16 26 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 29 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.04 0.96 6.12 -51.93 -0.32 0.65 16 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -28.66 257.33 -7.90 -36.56 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.04 Total: -1.33 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.15 Total: -18.96 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.56 Total: -36.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.66 -7.90 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.717 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds