Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30996 * 119.99888 * 2 1 4 4 C 1.50698 * 120.00395 * 359.72103 * 3 2 1 5 5 N 1.46899 * 109.47111 * 125.27319 * 4 3 2 6 6 C 1.47906 * 110.99618 * 69.87743 * 5 4 3 7 7 C 1.53993 * 107.05912 * 214.15368 * 6 5 4 8 8 C 1.54594 * 105.13701 * 1.22513 * 7 6 5 9 9 H 1.08998 * 110.72985 * 263.41723 * 8 7 6 10 10 C 1.50708 * 110.72025 * 140.31458 * 8 7 6 11 11 H 1.08002 * 120.00164 * 245.31667 * 10 8 7 12 12 C 1.37880 * 119.99819 * 65.31778 * 10 8 7 13 13 N 1.31515 * 119.99888 * 8.39490 * 12 10 8 14 14 Si 1.86800 * 119.99654 * 188.39958 * 12 10 8 15 15 H 1.48495 * 109.47551 * 94.97871 * 14 12 10 16 16 H 1.48507 * 109.46658 * 214.98063 * 14 12 10 17 17 H 1.48497 * 109.47243 * 334.97412 * 14 12 10 18 18 C 1.48534 * 111.00263 * 312.48620 * 5 4 3 19 19 H 1.09008 * 109.46953 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46735 * 299.99717 * 1 2 3 21 21 H 1.08993 * 109.47074 * 60.00115 * 1 2 3 22 22 H 1.08006 * 119.99790 * 179.97438 * 2 1 3 23 23 H 1.08001 * 119.99565 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47406 * 245.28234 * 4 3 2 25 25 H 1.09008 * 109.46350 * 5.27822 * 4 3 2 26 26 H 1.09003 * 109.91555 * 333.51283 * 6 5 4 27 27 H 1.09001 * 109.91384 * 94.60123 * 6 5 4 28 28 H 1.08996 * 110.30898 * 120.14461 * 7 6 5 29 29 H 1.08995 * 110.30600 * 242.31249 * 7 6 5 30 30 H 0.96996 * 119.99407 * 180.02562 * 13 12 10 31 31 H 1.09002 * 110.65999 * 278.15254 * 18 5 4 32 32 H 1.08998 * 110.67046 * 41.28069 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 -0.0064 5 7 1.8517 3.2663 1.1242 6 6 3.2340 3.7501 0.9173 7 6 3.9053 3.8051 2.3021 8 6 2.8324 3.2954 3.2915 9 1 2.3043 4.1304 3.7518 10 6 3.4537 2.4143 4.3446 11 1 3.1950 1.3669 4.3938 12 6 4.3524 2.9455 5.2452 13 7 4.5436 4.2458 5.2942 14 14 5.2985 1.8182 6.3957 15 1 6.6221 1.5021 5.8014 16 1 5.4919 2.4950 7.7034 17 1 4.5335 0.5615 6.5972 18 6 1.8833 2.4759 2.3815 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 2.0470 -0.9354 0.0004 23 1 3.2420 1.1344 -0.0004 24 1 1.6030 2.9668 -0.9403 25 1 0.3403 2.2427 0.0842 26 1 3.7754 3.0609 0.2692 27 1 3.2164 4.7439 0.4701 28 1 4.7800 3.1552 2.3246 29 1 4.1878 4.8294 2.5451 30 1 5.1762 4.6194 5.9276 31 1 0.8879 2.4130 2.8212 32 1 2.2885 1.4805 2.2001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397645652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = -5.731302 kcal Electronic energy + Delta-G solvation = -12533.921037 eV Core-core repulsion = 10493.634592 eV Total energy + Delta-G solvation = -2040.286445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.06455 -36.52700 -34.71241 -32.06047 -29.90405 -28.34094 -26.83020 -25.15345 -21.85358 -21.42611 -19.21768 -18.46734 -17.00552 -16.64545 -16.23969 -15.54228 -14.82309 -14.64082 -14.26411 -13.99672 -13.65349 -13.27061 -13.06545 -12.61488 -12.53046 -12.41211 -12.15537 -12.12438 -11.75603 -11.57118 -11.08780 -10.87420 -10.50765 -9.88026 -9.20185 -8.15721 -6.24111 1.30448 1.39513 1.40393 1.51151 2.41557 3.15052 3.35550 3.99820 4.11021 4.18690 4.27565 4.42685 4.57518 4.63286 4.67891 4.81030 4.86560 4.91160 5.03584 5.13203 5.19912 5.26028 5.32602 5.58636 5.69916 5.78613 5.83392 5.91941 6.05652 6.32908 6.40757 6.85904 7.42811 8.94785 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.044303 B = 0.009941 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.866709 B = 2816.056268 C = 3191.784501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.153 4.153 3 C -0.204 4.204 4 C 0.069 3.931 5 N -0.524 5.524 6 C 0.042 3.958 7 C -0.100 4.100 8 C 0.041 3.959 9 H 0.001 0.999 10 C -0.532 4.532 11 H 0.053 0.947 12 C 0.014 3.986 13 N -0.919 5.919 14 Si 0.953 3.047 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.056 3.944 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.112 0.888 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -6.200 -10.248 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 C -0.224 4.224 4 C -0.058 4.058 5 N -0.246 5.246 6 C -0.086 4.086 7 C -0.139 4.139 8 C 0.022 3.978 9 H 0.020 0.980 10 C -0.571 4.571 11 H 0.072 0.928 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.779 3.221 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.072 4.072 19 H 0.091 0.909 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.130 0.870 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.146 -5.603 -10.134 12.671 hybrid contribution 1.452 -0.902 0.819 1.896 sum -3.694 -6.505 -9.315 11.947 Atomic orbital electron populations 1.20890 0.91978 1.03008 1.02159 1.23002 0.97387 0.97466 0.99366 1.23373 0.99734 0.96482 1.02802 1.21608 0.99871 0.89965 0.94363 1.64980 1.22540 1.34147 1.02953 1.22843 0.88879 1.00046 0.96847 1.22174 0.98413 0.99095 0.94215 1.19500 0.92142 0.93951 0.92245 0.98031 1.21420 1.25304 0.95518 1.14839 0.92830 1.25769 0.97960 0.96201 0.98572 1.70118 1.35937 1.12007 1.37748 0.85617 0.79092 0.79230 0.78204 1.20145 1.20847 1.19044 1.23118 0.98806 0.95452 0.89786 0.90860 0.92254 0.90454 0.86996 0.88833 0.89417 0.88998 0.93414 0.90571 0.94595 0.94639 0.92975 0.92129 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.65 71.24 0.62 -1.95 16 2 C -0.15 -3.85 10.26 25.65 0.26 -3.59 16 3 C -0.20 -5.95 6.86 25.65 0.18 -5.77 16 4 C 0.07 2.04 5.73 85.56 0.49 2.53 16 5 N -0.52 -19.83 5.54 -887.56 -4.91 -24.74 16 6 C 0.04 1.61 6.46 86.44 0.56 2.17 16 7 C -0.10 -4.86 5.97 31.47 0.19 -4.67 16 8 C 0.04 2.14 2.86 -10.33 -0.03 2.11 16 9 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 10 C -0.53 -30.10 8.37 25.60 0.21 -29.89 16 11 H 0.05 2.97 7.79 -2.91 -0.02 2.95 16 12 C 0.01 0.80 5.29 84.66 0.45 1.25 16 13 N -0.92 -54.85 12.97 21.45 0.28 -54.58 16 14 Si 0.95 44.21 29.55 68.60 2.03 46.24 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 C 0.06 2.42 5.73 86.65 0.50 2.91 16 19 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 20 H 0.06 1.37 7.67 -2.39 -0.02 1.35 16 21 H 0.08 1.39 7.84 -2.39 -0.02 1.37 16 22 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 23 H 0.09 2.94 7.10 -2.91 -0.02 2.92 16 24 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 25 H 0.09 2.46 5.80 -2.38 -0.01 2.45 16 26 H 0.05 1.68 6.46 -2.39 -0.02 1.67 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.04 1.81 7.84 -2.39 -0.02 1.79 16 29 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.04 1.88 6.12 -2.39 -0.01 1.87 16 Total: -1.00 -61.41 257.33 1.88 -59.53 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.07 Total: 8.44 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.42 Total: -34.89 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -4.64 Total: -79.32 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.41 1.88 -59.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.801 kcal (2) G-P(sol) polarization free energy of solvation -61.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds