Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 112.79176 * 2 1 4 4 C 1.53515 * 113.47099 * 229.19013 * 2 1 3 5 5 C 1.53516 * 83.57731 * 271.25794 * 4 2 1 6 6 N 1.47477 * 87.93003 * 333.97774 * 5 4 2 7 7 C 1.46900 * 110.99986 * 138.70167 * 6 5 4 8 8 C 1.52998 * 109.47277 * 77.25024 * 7 6 5 9 9 C 1.50707 * 115.54840 * 294.74646 * 8 7 6 10 10 H 1.07996 * 120.00039 * 279.68110 * 9 8 7 11 11 C 1.37881 * 119.99781 * 99.67861 * 9 8 7 12 12 N 1.31507 * 119.99650 * 181.03911 * 11 9 8 13 13 Si 1.86792 * 120.00181 * 1.03653 * 11 9 8 14 14 H 1.48502 * 109.47001 * 85.09842 * 13 11 9 15 15 H 1.48499 * 109.47479 * 205.10199 * 13 11 9 16 16 H 1.48502 * 109.47163 * 325.10392 * 13 11 9 17 17 C 1.52996 * 117.52045 * 80.44751 * 8 7 6 18 18 C 1.52998 * 117.50012 * 149.07849 * 8 7 6 19 19 H 1.09005 * 109.47040 * 289.19300 * 1 2 3 20 20 H 1.09004 * 109.47310 * 49.18743 * 1 2 3 21 21 H 1.08998 * 109.47477 * 169.19058 * 1 2 3 22 22 H 1.09003 * 114.16759 * 157.61108 * 4 2 1 23 23 H 1.08993 * 114.34773 * 24.91975 * 4 2 1 24 24 H 1.08996 * 113.47788 * 219.21465 * 5 4 2 25 25 H 1.08992 * 113.47304 * 88.74396 * 5 4 2 26 26 H 1.09004 * 109.47017 * 317.24927 * 7 6 5 27 27 H 1.09004 * 109.47300 * 197.25133 * 7 6 5 28 28 H 0.97006 * 120.00240 * 180.02562 * 12 11 9 29 29 H 1.09007 * 117.50045 * 214.97335 * 17 8 7 30 30 H 1.08998 * 117.50191 * 359.97438 * 17 8 7 31 31 H 1.08998 * 117.50295 * 359.97255 * 18 8 7 32 32 H 1.09008 * 117.49930 * 144.97788 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0048 0.0000 4 6 2.1414 -0.9203 -1.0658 5 6 2.0423 -1.9804 0.0401 6 7 2.1175 -0.8842 1.0238 7 6 1.1775 -1.1049 2.1309 8 6 1.7508 -2.1545 3.0851 9 6 1.9017 -3.5403 2.5124 10 1 1.0455 -4.1957 2.4518 11 6 3.1329 -3.9713 2.0657 12 7 3.2603 -5.1731 1.5472 13 14 4.6197 -2.8483 2.1971 14 1 5.2237 -2.9825 3.5471 15 1 5.6198 -3.2285 1.1673 16 1 4.1977 -1.4409 1.9814 17 6 2.7991 -1.6910 4.0986 18 6 1.3842 -2.0382 4.5660 19 1 -0.3633 0.3379 0.9706 20 1 -0.3634 0.6717 -0.7778 21 1 -0.3634 -1.0094 -0.1927 22 1 3.1626 -0.6618 -1.3460 23 1 1.4943 -1.1074 -1.9227 24 1 2.8987 -2.6538 0.0741 25 1 1.0891 -2.5088 0.0508 26 1 0.2250 -1.4563 1.7342 27 1 1.0241 -0.1696 2.6692 28 1 4.1265 -5.4766 1.2333 29 1 3.5979 -2.3883 4.3511 30 1 3.0809 -0.6381 4.0854 31 1 0.7350 -1.2137 4.8606 32 1 1.2519 -2.9640 5.1260 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403989865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = 70.759616 kcal Electronic energy + Delta-G solvation = -13219.403933 eV Core-core repulsion = 11182.434383 eV Total energy + Delta-G solvation = -2036.969550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89607 -36.50490 -32.05485 -29.59728 -29.12433 -25.72796 -23.81468 -23.14640 -21.57397 -18.91832 -17.94963 -16.44855 -15.42113 -15.06826 -14.72357 -14.32154 -13.37232 -12.67360 -12.51275 -12.15668 -12.01818 -11.86555 -11.24448 -11.16870 -10.90664 -10.45495 -10.24359 -10.09306 -9.82603 -9.55959 -9.37245 -8.86102 -8.50903 -8.36922 -7.75802 -6.02292 -4.05684 3.44849 3.55964 3.83161 4.59140 4.64343 4.97201 5.18492 5.27634 5.34372 5.59858 5.74324 5.81994 5.91083 6.08937 6.14871 6.17442 6.20307 6.26299 6.43459 6.46842 6.56350 6.59241 6.77522 6.83319 6.87161 7.07090 7.20093 7.39813 7.85373 7.93884 8.56471 8.97540 9.62618 11.07740 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032784 B = 0.018838 C = 0.015165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.879396 B = 1486.040054 C = 1845.920237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.015 3.985 3 H 0.080 0.920 4 C -0.157 4.157 5 C 0.031 3.969 6 N -0.453 5.453 7 C 0.060 3.940 8 C 0.011 3.989 9 C -0.491 4.491 10 H 0.073 0.927 11 C 0.085 3.915 12 N -0.902 5.902 13 Si 0.865 3.135 14 H -0.293 1.293 15 H -0.307 1.307 16 H -0.211 1.211 17 C -0.201 4.201 18 C -0.188 4.188 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 9.431 -2.616 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.095 4.095 3 H 0.099 0.901 4 C -0.195 4.195 5 C -0.098 4.098 6 N -0.175 5.175 7 C -0.069 4.069 8 C 0.010 3.990 9 C -0.529 4.529 10 H 0.091 0.909 11 C -0.118 4.118 12 N -0.539 5.539 13 Si 0.694 3.306 14 H -0.221 1.221 15 H -0.236 1.236 16 H -0.133 1.133 17 C -0.238 4.238 18 C -0.226 4.226 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.486 9.480 -2.342 10.076 hybrid contribution 0.121 0.128 -0.048 0.183 sum -2.365 9.608 -2.390 10.179 Atomic orbital electron populations 1.22046 0.95786 1.02157 1.01765 1.23239 0.93508 0.98581 0.94176 0.90142 1.23333 1.00930 0.98554 0.96707 1.23549 1.03043 0.94082 0.89120 1.69134 1.38674 1.06642 1.03033 1.22252 0.94237 0.96696 0.93699 1.19362 0.97682 0.95478 0.86483 1.20200 0.96342 0.95275 1.41037 0.90933 1.24963 0.98760 0.94543 0.93503 1.69918 1.24773 1.18070 1.41134 0.87250 0.81494 0.86061 0.75825 1.22088 1.23590 1.13260 1.22895 0.92825 0.99667 1.08390 1.22906 0.97587 1.01057 1.01047 0.92032 0.92604 0.92054 0.89985 0.91554 0.89722 0.90954 0.93894 0.93407 0.92762 0.89694 0.90767 0.91345 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.11 37.16 0.30 -1.97 16 2 C 0.01 0.24 4.78 -71.42 -0.34 -0.10 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.16 -2.61 8.04 -26.20 -0.21 -2.82 16 5 C 0.03 0.64 4.88 -7.53 -0.04 0.60 16 6 N -0.45 -9.28 4.47 -236.48 -1.06 -10.34 16 7 C 0.06 1.24 3.80 -3.82 -0.01 1.22 16 8 C 0.01 0.26 1.43 -155.66 -0.22 0.04 16 9 C -0.49 -13.57 8.02 -34.44 -0.28 -13.84 16 10 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.08 2.40 4.03 -17.82 -0.07 2.33 16 12 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 13 Si 0.86 22.21 21.75 -169.99 -3.70 18.51 16 14 H -0.29 -7.60 6.56 56.52 0.37 -7.23 16 15 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 16 H -0.21 -5.17 5.35 56.52 0.30 -4.87 16 17 C -0.20 -4.54 7.13 -26.73 -0.19 -4.74 16 18 C -0.19 -3.98 9.92 -26.73 -0.27 -4.25 16 19 H 0.06 0.87 6.99 -51.93 -0.36 0.51 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.92 6.69 -51.93 -0.35 0.58 16 22 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 24 H 0.08 2.03 4.99 -51.93 -0.26 1.77 16 25 H 0.07 1.57 6.78 -51.93 -0.35 1.22 16 26 H 0.04 0.87 5.82 -51.93 -0.30 0.57 16 27 H 0.05 0.92 8.00 -51.93 -0.42 0.50 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.08 2.07 5.29 -51.92 -0.27 1.80 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 LS Contribution 237.22 15.07 3.57 3.57 Total: -1.00 -29.50 237.22 -6.69 -36.19 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.96 Total: 2.07 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.33 Total: -23.52 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.28 Total: -36.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -3.70 Total: 18.51 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.50 -6.69 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403989865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.948 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds