Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 112.79176 * 2 1 4 4 C 1.53515 * 113.47099 * 229.19013 * 2 1 3 5 5 C 1.53516 * 83.57731 * 271.25794 * 4 2 1 6 6 N 1.47477 * 87.93003 * 333.97774 * 5 4 2 7 7 C 1.46900 * 110.99986 * 138.70167 * 6 5 4 8 8 C 1.52998 * 109.47277 * 77.25024 * 7 6 5 9 9 C 1.50707 * 115.54840 * 294.74646 * 8 7 6 10 10 H 1.07996 * 120.00039 * 279.68110 * 9 8 7 11 11 C 1.37881 * 119.99781 * 99.67861 * 9 8 7 12 12 N 1.31507 * 119.99650 * 181.03911 * 11 9 8 13 13 Si 1.86792 * 120.00181 * 1.03653 * 11 9 8 14 14 H 1.48502 * 109.47001 * 85.09842 * 13 11 9 15 15 H 1.48499 * 109.47479 * 205.10199 * 13 11 9 16 16 H 1.48502 * 109.47163 * 325.10392 * 13 11 9 17 17 C 1.52996 * 117.52045 * 80.44751 * 8 7 6 18 18 C 1.52998 * 117.50012 * 149.07849 * 8 7 6 19 19 H 1.09005 * 109.47040 * 289.19300 * 1 2 3 20 20 H 1.09004 * 109.47310 * 49.18743 * 1 2 3 21 21 H 1.08998 * 109.47477 * 169.19058 * 1 2 3 22 22 H 1.09003 * 114.16759 * 157.61108 * 4 2 1 23 23 H 1.08993 * 114.34773 * 24.91975 * 4 2 1 24 24 H 1.08996 * 113.47788 * 219.21465 * 5 4 2 25 25 H 1.08992 * 113.47304 * 88.74396 * 5 4 2 26 26 H 1.09004 * 109.47017 * 317.24927 * 7 6 5 27 27 H 1.09004 * 109.47300 * 197.25133 * 7 6 5 28 28 H 0.97006 * 120.00240 * 180.02562 * 12 11 9 29 29 H 1.09007 * 117.50045 * 214.97335 * 17 8 7 30 30 H 1.08998 * 117.50191 * 359.97438 * 17 8 7 31 31 H 1.08998 * 117.50295 * 359.97255 * 18 8 7 32 32 H 1.09008 * 117.49930 * 144.97788 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0048 0.0000 4 6 2.1414 -0.9203 -1.0658 5 6 2.0423 -1.9804 0.0401 6 7 2.1175 -0.8842 1.0238 7 6 1.1775 -1.1049 2.1309 8 6 1.7508 -2.1545 3.0851 9 6 1.9017 -3.5403 2.5124 10 1 1.0455 -4.1957 2.4518 11 6 3.1329 -3.9713 2.0657 12 7 3.2603 -5.1731 1.5472 13 14 4.6197 -2.8483 2.1971 14 1 5.2237 -2.9825 3.5471 15 1 5.6198 -3.2285 1.1673 16 1 4.1977 -1.4409 1.9814 17 6 2.7991 -1.6910 4.0986 18 6 1.3842 -2.0382 4.5660 19 1 -0.3633 0.3379 0.9706 20 1 -0.3634 0.6717 -0.7778 21 1 -0.3634 -1.0094 -0.1927 22 1 3.1626 -0.6618 -1.3460 23 1 1.4943 -1.1074 -1.9227 24 1 2.8987 -2.6538 0.0741 25 1 1.0891 -2.5088 0.0508 26 1 0.2250 -1.4563 1.7342 27 1 1.0241 -0.1696 2.6692 28 1 4.1265 -5.4766 1.2333 29 1 3.5979 -2.3883 4.3511 30 1 3.0809 -0.6381 4.0854 31 1 0.7350 -1.2137 4.8606 32 1 1.2519 -2.9640 5.1260 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403989865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = 50.005585 kcal Electronic energy + Delta-G solvation = -13220.303896 eV Core-core repulsion = 11182.434383 eV Total energy + Delta-G solvation = -2037.869512 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37496 -38.27575 -34.24191 -31.10158 -30.40008 -27.80126 -25.44696 -24.58085 -23.32025 -20.78632 -19.39693 -18.39040 -16.98295 -16.89530 -16.34362 -15.90721 -15.15343 -14.68967 -14.11125 -13.76827 -13.42385 -13.31741 -13.06569 -12.68595 -12.46249 -12.18994 -11.90979 -11.78806 -11.57278 -11.35742 -11.14772 -10.75372 -10.49085 -10.22881 -9.36309 -8.25729 -6.30287 1.37211 1.45563 1.75511 2.47233 3.04129 3.15619 3.48531 3.67476 4.02651 4.12909 4.36214 4.42777 4.44756 4.50403 4.59973 4.74572 4.82806 4.86086 4.89861 4.98668 5.08474 5.10402 5.16041 5.21094 5.35137 5.48340 5.49048 5.76202 5.80592 6.29630 6.44083 6.76071 7.40726 8.88199 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032784 B = 0.018838 C = 0.015165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.879396 B = 1486.040054 C = 1845.920237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.022 3.978 3 H 0.101 0.899 4 C -0.142 4.142 5 C 0.023 3.977 6 N -0.475 5.475 7 C 0.069 3.931 8 C -0.016 4.016 9 C -0.484 4.484 10 H 0.028 0.972 11 C 0.044 3.956 12 N -0.949 5.949 13 Si 0.919 3.081 14 H -0.297 1.297 15 H -0.319 1.319 16 H -0.187 1.187 17 C -0.200 4.200 18 C -0.169 4.169 19 H 0.065 0.935 20 H 0.085 0.915 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 12.626 -2.588 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.087 4.087 3 H 0.119 0.881 4 C -0.180 4.180 5 C -0.106 4.106 6 N -0.197 5.197 7 C -0.059 4.059 8 C -0.017 4.017 9 C -0.521 4.521 10 H 0.047 0.953 11 C -0.154 4.154 12 N -0.589 5.589 13 Si 0.747 3.253 14 H -0.225 1.225 15 H -0.249 1.249 16 H -0.108 1.108 17 C -0.237 4.237 18 C -0.207 4.207 19 H 0.084 0.916 20 H 0.103 0.897 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.942 12.699 -2.303 13.237 hybrid contribution 0.171 -0.928 -0.046 0.945 sum -2.771 11.771 -2.349 12.319 Atomic orbital electron populations 1.22014 0.94092 1.02050 1.03117 1.23326 0.94828 0.98638 0.91886 0.88058 1.23300 1.02005 0.96107 0.96539 1.23402 1.00346 0.94617 0.92277 1.69049 1.39782 1.07054 1.03798 1.22115 0.93888 0.96563 0.93352 1.19405 0.99962 0.94143 0.88236 1.20318 0.94591 0.96974 1.40224 0.95342 1.25556 1.01153 0.95330 0.93312 1.70042 1.25205 1.20170 1.43464 0.86431 0.78285 0.85701 0.74878 1.22473 1.24875 1.10846 1.22876 0.92699 1.00410 1.07683 1.22952 0.97209 1.01882 0.98659 0.91619 0.89656 0.93581 0.89326 0.89312 0.93573 0.92938 0.94101 0.90825 0.93016 0.91895 0.88323 0.87510 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.11 71.98 0.58 -3.25 16 2 C 0.02 0.65 4.78 42.19 0.20 0.85 16 3 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 4 C -0.14 -4.33 8.04 30.94 0.25 -4.08 16 5 C 0.02 0.94 4.88 83.58 0.41 1.35 16 6 N -0.47 -18.26 4.47 -902.09 -4.03 -22.29 16 7 C 0.07 2.69 3.80 86.30 0.33 3.01 16 8 C -0.02 -0.75 1.43 -52.93 -0.08 -0.83 16 9 C -0.48 -27.38 8.02 25.60 0.21 -27.18 16 10 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 11 C 0.04 2.58 4.03 84.66 0.34 2.92 16 12 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 13 Si 0.92 46.61 21.75 68.60 1.49 48.10 16 14 H -0.30 -15.06 6.56 99.48 0.65 -14.41 16 15 H -0.32 -16.66 7.11 99.48 0.71 -15.95 16 16 H -0.19 -8.74 5.35 99.48 0.53 -8.20 16 17 C -0.20 -8.53 7.13 30.59 0.22 -8.31 16 18 C -0.17 -6.73 9.92 30.59 0.30 -6.43 16 19 H 0.06 1.59 6.99 -2.38 -0.02 1.57 16 20 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.05 1.28 6.69 -2.39 -0.02 1.27 16 22 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.09 2.30 8.11 -2.39 -0.02 2.28 16 24 H 0.05 2.25 4.99 -2.39 -0.01 2.23 16 25 H 0.05 2.33 6.78 -2.39 -0.02 2.31 16 26 H 0.04 1.59 5.82 -2.38 -0.01 1.57 16 27 H 0.07 2.48 8.00 -2.39 -0.02 2.46 16 28 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.06 2.97 5.29 -2.38 -0.01 2.96 16 30 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -65.22 237.22 1.38 -63.83 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.86 Total: 11.83 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 2.76 Total: -41.93 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.73 Total: -81.83 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.49 Total: 48.10 kcal Total: -65.22 1.38 -63.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403989865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.840 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds