Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 113.02750 * 2 1 4 4 C 1.53935 * 113.75986 * 131.71557 * 2 1 3 5 5 C 1.53942 * 86.45406 * 90.65218 * 4 2 1 6 6 N 1.47964 * 86.17797 * 23.66725 * 5 4 2 7 7 C 1.46900 * 110.99685 * 222.41408 * 6 5 4 8 8 C 1.52997 * 109.47286 * 282.87584 * 7 6 5 9 9 C 1.50698 * 115.55209 * 39.74288 * 8 7 6 10 10 H 1.08007 * 119.99713 * 274.02324 * 9 8 7 11 11 C 1.37873 * 120.00252 * 94.02072 * 9 8 7 12 12 N 1.31512 * 120.00046 * 174.10726 * 11 9 8 13 13 Si 1.86799 * 119.99844 * 354.10367 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.58654 * 13 11 9 15 15 H 1.48498 * 109.47166 * 214.58349 * 13 11 9 16 16 H 1.48494 * 109.47560 * 334.58791 * 13 11 9 17 17 C 1.52999 * 117.49887 * 254.03271 * 8 7 6 18 18 C 1.52996 * 60.00143 * 252.50902 * 17 8 7 19 19 H 1.09004 * 109.47259 * 307.78738 * 1 2 3 20 20 H 1.09006 * 109.47037 * 67.78508 * 1 2 3 21 21 H 1.09003 * 109.47119 * 187.78610 * 1 2 3 22 22 H 1.08994 * 113.73361 * 336.23992 * 4 2 1 23 23 H 1.09002 * 113.73271 * 205.06488 * 4 2 1 24 24 H 1.08998 * 113.75552 * 137.98369 * 5 4 2 25 25 H 1.08997 * 113.75894 * 269.34673 * 5 4 2 26 26 H 1.08997 * 109.47013 * 42.87537 * 7 6 5 27 27 H 1.08995 * 109.46979 * 162.87206 * 7 6 5 28 28 H 0.97004 * 119.99932 * 179.97438 * 12 11 9 29 29 H 1.09001 * 117.49844 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.50234 * 145.02239 * 17 8 7 31 31 H 1.09000 * 117.50090 * 252.50802 * 18 17 8 32 32 H 1.09002 * 117.51750 * 107.47977 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9564 1.0032 0.0000 4 6 2.1502 -0.9375 1.0517 5 6 2.1279 -2.0217 -0.0410 6 7 2.1270 -0.9042 -1.0108 7 6 1.1870 -1.1618 -2.1099 8 6 1.8061 -2.1640 -3.0862 9 6 2.5796 -3.2930 -2.4553 10 1 3.6215 -3.1596 -2.2039 11 6 1.9573 -4.4964 -2.1991 12 7 2.6577 -5.5179 -1.7570 13 14 0.1192 -4.6757 -2.4799 14 1 -0.1224 -5.2338 -3.8347 15 1 -0.4505 -5.5909 -1.4587 16 1 -0.5306 -3.3450 -2.3697 17 6 2.3086 -1.6256 -4.4273 18 6 1.0331 -2.4686 -4.3709 19 1 -0.3634 0.6297 0.8122 20 1 -0.3633 0.3886 -0.9514 21 1 -0.3633 -1.0182 0.1392 22 1 1.4912 -1.1494 1.8935 23 1 3.1542 -0.6468 1.3608 24 1 3.0311 -2.6308 -0.0737 25 1 1.2131 -2.6143 -0.0530 26 1 0.2608 -1.5716 -1.7073 27 1 0.9747 -0.2291 -2.6325 28 1 2.2198 -6.3644 -1.5764 29 1 2.1977 -0.5575 -4.6142 30 1 3.1989 -2.0879 -4.8535 31 1 1.0842 -3.4855 -4.7600 32 1 0.0832 -1.9553 -4.5204 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403989869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = 61.428310 kcal Electronic energy + Delta-G solvation = -13093.761964 eV Core-core repulsion = 11056.387779 eV Total energy + Delta-G solvation = -2037.374186 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57884 -36.46799 -32.04830 -29.58121 -29.16322 -25.73752 -23.67847 -23.07133 -21.55318 -18.93880 -18.01294 -16.15393 -15.58731 -14.98204 -14.58163 -14.32243 -13.38507 -12.78580 -12.55790 -12.17972 -12.05382 -11.89224 -11.23704 -11.07733 -10.99483 -10.52674 -10.31845 -10.12955 -9.88915 -9.79129 -9.47206 -8.88973 -8.50954 -8.36153 -7.76441 -6.05441 -4.01732 3.28340 3.38741 3.43319 4.45360 4.58418 5.02653 5.14108 5.26069 5.32038 5.60365 5.80554 5.81738 5.89167 6.05548 6.13341 6.17007 6.22014 6.28984 6.44694 6.49717 6.54494 6.57134 6.79334 6.83605 6.94759 7.15509 7.20341 7.46414 7.84088 7.97768 8.62400 9.01646 9.59152 11.06562 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.016793 C = 0.014580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.897586 B = 1666.975520 C = 1919.931916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 H 0.085 0.915 4 C -0.157 4.157 5 C 0.045 3.955 6 N -0.455 5.455 7 C 0.057 3.943 8 C 0.010 3.990 9 C -0.466 4.466 10 H 0.081 0.919 11 C 0.076 3.924 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.261 1.261 17 C -0.177 4.177 18 C -0.209 4.209 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 8.338 2.669 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.095 4.095 3 H 0.103 0.897 4 C -0.194 4.194 5 C -0.083 4.083 6 N -0.177 5.177 7 C -0.071 4.071 8 C 0.009 3.991 9 C -0.504 4.504 10 H 0.099 0.901 11 C -0.126 4.126 12 N -0.537 5.537 13 Si 0.700 3.300 14 H -0.208 1.208 15 H -0.224 1.224 16 H -0.185 1.185 17 C -0.214 4.214 18 C -0.246 4.246 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.180 8.323 2.370 9.610 hybrid contribution -1.955 -0.518 -0.018 2.023 sum -6.135 7.804 2.352 10.202 Atomic orbital electron populations 1.22006 0.96075 1.01951 1.01641 1.23415 0.93134 0.98503 0.94462 0.89656 1.23576 1.00794 0.98118 0.96956 1.23570 1.03005 0.93222 0.88506 1.68564 1.38607 1.06861 1.03634 1.22269 0.93882 0.96882 0.94091 1.19366 0.97612 0.96654 0.85467 1.20213 0.97838 0.93305 1.39021 0.90141 1.24925 0.97302 0.95504 0.94831 1.69900 1.35604 1.02045 1.46193 0.87002 0.87212 0.78228 0.77553 1.20761 1.22365 1.18534 1.22822 0.96949 0.96663 1.04997 1.22938 0.94534 1.00280 1.06891 0.92482 0.92228 0.92450 0.92242 0.89998 0.88473 0.92317 0.94607 0.93402 0.92788 0.91243 0.89766 0.89651 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.17 37.16 0.30 -2.05 16 2 C 0.01 0.24 4.93 -66.53 -0.33 -0.09 16 3 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.16 -2.57 7.85 -25.79 -0.20 -2.77 16 5 C 0.05 0.95 5.49 -2.75 -0.02 0.93 16 6 N -0.45 -9.34 6.06 -230.49 -1.40 -10.73 16 7 C 0.06 1.22 3.90 -3.83 -0.01 1.21 16 8 C 0.01 0.24 1.24 -155.66 -0.19 0.05 16 9 C -0.47 -12.68 6.34 -34.44 -0.22 -12.90 16 10 H 0.08 2.44 7.92 -52.48 -0.42 2.03 16 11 C 0.08 2.11 5.40 -17.82 -0.10 2.01 16 12 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 13 Si 0.87 21.63 24.88 -169.99 -4.23 17.40 16 14 H -0.28 -6.97 7.09 56.52 0.40 -6.57 16 15 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.26 -6.19 5.55 56.52 0.31 -5.88 16 17 C -0.18 -3.80 9.88 -26.73 -0.26 -4.07 16 18 C -0.21 -4.62 7.42 -26.73 -0.20 -4.81 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.06 0.87 7.27 -51.93 -0.38 0.50 16 21 H 0.06 0.92 6.87 -51.93 -0.36 0.56 16 22 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.10 2.28 7.31 -51.93 -0.38 1.90 16 25 H 0.06 1.29 7.29 -51.93 -0.38 0.92 16 26 H 0.04 0.78 4.72 -51.93 -0.25 0.53 16 27 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 30 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.09 1.99 6.79 -51.93 -0.35 1.64 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 246.39 15.07 3.71 3.71 Total: -1.00 -28.64 246.39 -7.45 -36.09 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.09 Total: 1.98 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.23 Total: -22.49 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.62 Total: -36.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.23 Total: 17.40 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.64 -7.45 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403989869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.522 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds