Wall clock time and date at job start Mon Mar 30 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 113.02750 * 2 1 4 4 C 1.53935 * 113.75986 * 131.71557 * 2 1 3 5 5 C 1.53942 * 86.45406 * 90.65218 * 4 2 1 6 6 N 1.47964 * 86.17797 * 23.66725 * 5 4 2 7 7 C 1.46900 * 110.99685 * 222.41408 * 6 5 4 8 8 C 1.52997 * 109.47286 * 282.87584 * 7 6 5 9 9 C 1.50698 * 115.55209 * 39.74288 * 8 7 6 10 10 H 1.08007 * 119.99713 * 274.02324 * 9 8 7 11 11 C 1.37873 * 120.00252 * 94.02072 * 9 8 7 12 12 N 1.31512 * 120.00046 * 174.10726 * 11 9 8 13 13 Si 1.86799 * 119.99844 * 354.10367 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.58654 * 13 11 9 15 15 H 1.48498 * 109.47166 * 214.58349 * 13 11 9 16 16 H 1.48494 * 109.47560 * 334.58791 * 13 11 9 17 17 C 1.52999 * 117.49887 * 254.03271 * 8 7 6 18 18 C 1.52996 * 60.00143 * 252.50902 * 17 8 7 19 19 H 1.09004 * 109.47259 * 307.78738 * 1 2 3 20 20 H 1.09006 * 109.47037 * 67.78508 * 1 2 3 21 21 H 1.09003 * 109.47119 * 187.78610 * 1 2 3 22 22 H 1.08994 * 113.73361 * 336.23992 * 4 2 1 23 23 H 1.09002 * 113.73271 * 205.06488 * 4 2 1 24 24 H 1.08998 * 113.75552 * 137.98369 * 5 4 2 25 25 H 1.08997 * 113.75894 * 269.34673 * 5 4 2 26 26 H 1.08997 * 109.47013 * 42.87537 * 7 6 5 27 27 H 1.08995 * 109.46979 * 162.87206 * 7 6 5 28 28 H 0.97004 * 119.99932 * 179.97438 * 12 11 9 29 29 H 1.09001 * 117.49844 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.50234 * 145.02239 * 17 8 7 31 31 H 1.09000 * 117.50090 * 252.50802 * 18 17 8 32 32 H 1.09002 * 117.51750 * 107.47977 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9564 1.0032 0.0000 4 6 2.1502 -0.9375 1.0517 5 6 2.1279 -2.0217 -0.0410 6 7 2.1270 -0.9042 -1.0108 7 6 1.1870 -1.1618 -2.1099 8 6 1.8061 -2.1640 -3.0862 9 6 2.5796 -3.2930 -2.4553 10 1 3.6215 -3.1596 -2.2039 11 6 1.9573 -4.4964 -2.1991 12 7 2.6577 -5.5179 -1.7570 13 14 0.1192 -4.6757 -2.4799 14 1 -0.1224 -5.2338 -3.8347 15 1 -0.4505 -5.5909 -1.4587 16 1 -0.5306 -3.3450 -2.3697 17 6 2.3086 -1.6256 -4.4273 18 6 1.0331 -2.4686 -4.3709 19 1 -0.3634 0.6297 0.8122 20 1 -0.3633 0.3886 -0.9514 21 1 -0.3633 -1.0182 0.1392 22 1 1.4912 -1.1494 1.8935 23 1 3.1542 -0.6468 1.3608 24 1 3.0311 -2.6308 -0.0737 25 1 1.2131 -2.6143 -0.0530 26 1 0.2608 -1.5716 -1.7073 27 1 0.9747 -0.2291 -2.6325 28 1 2.2198 -6.3644 -1.5764 29 1 2.1977 -0.5575 -4.6142 30 1 3.1989 -2.0879 -4.8535 31 1 1.0842 -3.4855 -4.7600 32 1 0.0832 -1.9553 -4.5204 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403989869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:47 Heat of formation + Delta-G solvation = 41.353956 kcal Electronic energy + Delta-G solvation = -13094.632454 eV Core-core repulsion = 11056.387779 eV Total energy + Delta-G solvation = -2038.244675 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08883 -38.23103 -34.19461 -31.07932 -30.50650 -27.78599 -25.30786 -24.52977 -23.30397 -20.82540 -19.47261 -18.13779 -17.15182 -16.70644 -16.21602 -15.93756 -15.13436 -14.74767 -14.21516 -13.75959 -13.45891 -13.30940 -13.06020 -12.82804 -12.37036 -12.26756 -12.02844 -11.90977 -11.51792 -11.41250 -11.26137 -10.77113 -10.55542 -10.18255 -9.34312 -8.23331 -6.22027 1.30288 1.34657 1.45600 2.37542 3.04946 3.10623 3.41535 3.71074 4.01888 4.14300 4.35212 4.40008 4.42214 4.53266 4.55238 4.72028 4.82289 4.83820 4.86588 4.97808 5.07810 5.08540 5.13701 5.24124 5.37148 5.46984 5.52468 5.79161 5.85629 6.36548 6.49931 6.81444 7.41117 8.92872 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.016793 C = 0.014580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.897586 B = 1666.975520 C = 1919.931916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.022 3.978 3 H 0.106 0.894 4 C -0.139 4.139 5 C 0.040 3.960 6 N -0.479 5.479 7 C 0.067 3.933 8 C -0.021 4.021 9 C -0.452 4.452 10 H 0.030 0.970 11 C 0.027 3.973 12 N -0.949 5.949 13 Si 0.925 3.075 14 H -0.277 1.277 15 H -0.300 1.300 16 H -0.237 1.237 17 C -0.165 4.165 18 C -0.201 4.201 19 H 0.087 0.913 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 10.814 2.600 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.087 4.087 3 H 0.124 0.876 4 C -0.177 4.177 5 C -0.090 4.090 6 N -0.201 5.201 7 C -0.062 4.062 8 C -0.022 4.022 9 C -0.490 4.490 10 H 0.048 0.952 11 C -0.170 4.170 12 N -0.589 5.589 13 Si 0.751 3.249 14 H -0.203 1.203 15 H -0.228 1.228 16 H -0.160 1.160 17 C -0.202 4.202 18 C -0.239 4.239 19 H 0.106 0.894 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.273 10.831 2.293 12.724 hybrid contribution -1.168 -1.257 0.006 1.716 sum -7.440 9.574 2.298 12.341 Atomic orbital electron populations 1.21995 0.94390 1.01720 1.03218 1.23541 0.94456 0.98567 0.92117 0.87559 1.23490 1.01979 0.95601 0.96623 1.23326 1.00003 0.93860 0.91771 1.68507 1.39819 1.07337 1.04484 1.22139 0.93386 0.96893 0.93766 1.19430 0.99189 0.96798 0.86766 1.20181 0.95933 0.94770 1.38126 0.95188 1.25588 1.01404 0.95116 0.94879 1.70042 1.37544 1.02767 1.48597 0.86121 0.82329 0.79122 0.77280 1.20324 1.22785 1.16041 1.22852 0.96337 0.98339 1.02675 1.22960 0.96062 0.99954 1.04887 0.89373 0.91747 0.94036 0.89980 0.89173 0.92943 0.94041 0.95006 0.91095 0.92935 0.88067 0.91095 0.91332 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.17 71.98 0.59 -3.39 16 2 C 0.02 0.66 4.93 44.98 0.22 0.88 16 3 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 4 C -0.14 -4.29 7.85 31.24 0.25 -4.05 16 5 C 0.04 1.66 5.49 86.41 0.47 2.14 16 6 N -0.48 -19.03 6.06 -883.14 -5.35 -24.39 16 7 C 0.07 2.67 3.90 86.30 0.34 3.01 16 8 C -0.02 -0.96 1.24 -52.93 -0.07 -1.02 16 9 C -0.45 -25.39 6.34 25.60 0.16 -25.22 16 10 H 0.03 1.94 7.92 -2.91 -0.02 1.92 16 11 C 0.03 1.53 5.40 84.65 0.46 1.99 16 12 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 13 Si 0.92 44.64 24.88 68.60 1.71 46.34 16 14 H -0.28 -13.13 7.09 99.48 0.71 -12.42 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 16 H -0.24 -10.45 5.55 99.48 0.55 -9.90 16 17 C -0.16 -6.73 9.88 30.59 0.30 -6.43 16 18 C -0.20 -8.36 7.42 30.59 0.23 -8.13 16 19 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.06 1.60 7.27 -2.38 -0.02 1.58 16 21 H 0.04 1.20 6.87 -2.39 -0.02 1.18 16 22 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 23 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.05 2.62 7.31 -2.39 -0.02 2.60 16 25 H 0.04 1.86 7.29 -2.39 -0.02 1.84 16 26 H 0.03 1.29 4.72 -2.39 -0.01 1.28 16 27 H 0.07 2.50 7.75 -2.39 -0.02 2.48 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.10 3.50 8.08 -2.39 -0.02 3.48 16 30 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.07 3.08 6.79 -2.39 -0.02 3.07 16 32 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -63.82 246.39 0.52 -63.30 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.92 Total: 13.64 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 2.95 Total: -40.23 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -5.05 Total: -83.05 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.71 Total: 46.34 kcal Total: -63.82 0.52 -63.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403989869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.653 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds