Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00204 * 2 1 4 4 C 1.53004 * 109.46974 * 124.72615 * 3 2 1 5 5 H 1.09000 * 110.63838 * 56.69792 * 4 3 2 6 6 C 1.54597 * 110.72349 * 293.55034 * 4 3 2 7 7 C 1.53994 * 105.13687 * 219.68238 * 6 4 3 8 8 N 1.47903 * 107.06000 * 358.77392 * 7 6 4 9 9 C 1.46899 * 110.99855 * 145.84087 * 8 7 6 10 10 C 1.50697 * 109.46980 * 184.22549 * 9 8 7 11 11 H 1.08001 * 120.00333 * 4.92199 * 10 9 8 12 12 C 1.37877 * 120.00158 * 184.92805 * 10 9 8 13 13 N 1.31520 * 120.00083 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99826 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47135 * 90.00331 * 14 12 10 16 16 H 1.48503 * 109.47318 * 210.00070 * 14 12 10 17 17 H 1.48499 * 109.47339 * 330.00584 * 14 12 10 18 18 C 1.48540 * 105.81700 * 25.33107 * 8 7 6 19 19 H 1.07998 * 119.99499 * 0.26631 * 1 2 3 20 20 H 1.07998 * 119.99858 * 180.27274 * 1 2 3 21 21 H 1.07998 * 119.99499 * 179.73369 * 2 1 3 22 22 H 1.08996 * 109.47000 * 244.72981 * 3 2 1 23 23 H 1.09001 * 109.47128 * 4.73324 * 3 2 1 24 24 H 1.08998 * 110.31098 * 338.60024 * 6 4 3 25 25 H 1.09003 * 110.30800 * 100.67257 * 6 4 3 26 26 H 1.08998 * 109.91714 * 118.12693 * 7 6 4 27 27 H 1.09008 * 109.91731 * 239.22536 * 7 6 4 28 28 H 1.08994 * 109.47148 * 304.22473 * 9 8 7 29 29 H 1.09004 * 109.47084 * 64.22719 * 9 8 7 30 30 H 0.97001 * 119.99724 * 179.97438 * 13 12 10 31 31 H 1.09007 * 110.66257 * 202.35851 * 18 8 7 32 32 H 1.08993 * 110.66554 * 79.22567 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0302 1.3358 1.1856 5 1 3.7078 0.4827 1.1511 6 6 2.2551 1.3650 2.5229 7 6 3.0404 2.3379 3.4218 8 7 4.2078 2.8030 2.6418 9 6 4.5376 4.1968 2.9683 10 6 5.6623 4.6675 2.0826 11 1 6.0359 4.0267 1.2976 12 6 6.2144 5.9163 2.2744 13 7 7.1956 6.3273 1.5011 14 14 5.5678 7.0248 3.6318 15 1 6.3270 6.7704 4.8824 16 1 5.7342 8.4454 3.2321 17 1 4.1284 6.7401 3.8599 18 6 3.8206 2.6680 1.2141 19 1 -0.5399 0.9353 -0.0043 20 1 -0.5400 -0.9353 0.0045 21 1 1.8500 -0.9353 0.0043 22 1 2.6252 1.4003 -0.9293 23 1 1.3583 2.1318 0.0848 24 1 1.2408 1.7313 2.3643 25 1 2.2321 0.3705 2.9686 26 1 2.4108 3.1864 3.6895 27 1 3.3735 1.8237 4.3234 28 1 3.6613 4.8247 2.8075 29 1 4.8452 4.2624 4.0120 30 1 7.5838 7.2060 1.6359 31 1 4.7051 2.6043 0.5801 32 1 3.1853 3.4989 0.9077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599526740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = 13.573231 kcal Electronic energy + Delta-G solvation = -12262.090694 eV Core-core repulsion = 10222.641356 eV Total energy + Delta-G solvation = -2039.449338 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.58310 -35.11404 -32.82321 -31.14710 -29.11211 -26.96361 -25.18112 -21.92452 -20.27366 -19.86221 -19.42173 -16.77583 -15.39136 -15.20770 -14.67282 -13.98872 -13.88814 -13.08256 -12.81734 -12.54785 -12.34130 -11.97805 -11.49591 -11.24994 -11.10555 -10.73192 -10.54298 -10.38437 -10.18298 -10.08807 -9.75390 -9.24499 -9.17968 -8.56868 -7.43646 -6.04923 -4.02577 2.30937 3.29379 3.36457 3.39153 4.42857 4.78944 4.89209 5.08699 5.19552 5.28371 5.32860 5.44201 5.69270 5.83476 5.86325 5.87517 6.11102 6.15992 6.25332 6.29606 6.48275 6.62012 6.64816 6.74985 6.82013 6.85637 7.02754 7.52814 7.93031 7.99561 8.64848 9.02013 9.56850 11.08064 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061908 B = 0.007976 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.172720 B = 3509.791192 C = 3713.316172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.092 4.092 5 H 0.079 0.921 6 C -0.120 4.120 7 C 0.030 3.970 8 N -0.509 5.509 9 C 0.154 3.846 10 C -0.512 4.512 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.269 1.269 18 C 0.059 3.941 19 H 0.093 0.907 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.067 0.933 28 H -0.013 1.013 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 -9.536 -0.421 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.157 4.157 3 C -0.126 4.126 4 C -0.111 4.111 5 H 0.097 0.903 6 C -0.158 4.158 7 C -0.099 4.099 8 N -0.233 5.233 9 C 0.027 3.973 10 C -0.551 4.551 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.194 1.194 18 C -0.069 4.069 19 H 0.112 0.888 20 H 0.111 0.889 21 H 0.124 0.876 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.079 -9.663 -0.314 14.704 hybrid contribution -0.952 1.232 0.621 1.677 sum -12.031 -8.430 0.307 14.694 Atomic orbital electron populations 1.23775 0.96001 1.01432 1.03233 1.23008 0.95926 0.98696 0.98062 1.20811 0.97986 0.94924 0.98834 1.22124 0.96238 0.99432 0.93275 0.90262 1.22415 0.98380 0.99339 0.95712 1.22866 0.92173 0.97224 0.97593 1.64692 1.31768 1.23698 1.03116 1.20325 0.95951 0.83869 0.97154 1.21064 1.16262 1.01043 1.16681 0.90171 1.24911 0.94646 0.97693 0.96056 1.69899 1.25143 1.19832 1.39053 0.86837 0.79859 0.80103 0.82820 1.20085 1.21206 1.19381 1.23040 0.98258 0.94023 0.91613 0.88830 0.88938 0.87601 0.90679 0.91604 0.92173 0.91892 0.94835 0.91441 0.99501 0.95645 0.92666 0.89992 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.14 14.32 29.01 0.42 -1.72 16 2 C -0.14 -1.56 9.07 -36.03 -0.33 -1.88 16 3 C -0.09 -1.13 5.06 -27.88 -0.14 -1.27 16 4 C -0.09 -1.39 3.08 -88.76 -0.27 -1.66 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.12 -1.77 6.06 -25.37 -0.15 -1.93 16 7 C 0.03 0.54 6.70 -2.75 -0.02 0.52 16 8 N -0.51 -11.13 5.34 -231.89 -1.24 -12.37 16 9 C 0.15 3.87 3.67 -4.98 -0.02 3.85 16 10 C -0.51 -14.84 9.24 -34.44 -0.32 -15.16 16 11 H 0.08 2.50 6.96 -52.49 -0.37 2.13 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 14 Si 0.88 21.87 27.37 -169.99 -4.65 17.21 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.51 6.69 56.52 0.38 -6.13 16 18 C 0.06 1.15 5.15 -1.90 -0.01 1.14 16 19 H 0.09 0.95 7.84 -52.49 -0.41 0.54 16 20 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 21 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 24 H 0.06 0.83 7.80 -51.93 -0.41 0.43 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 27 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 28 H -0.01 -0.32 7.37 -51.93 -0.38 -0.70 16 29 H 0.03 0.65 7.30 -51.93 -0.38 0.27 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.72 7.28 -51.92 -0.38 1.35 16 32 H 0.04 0.80 7.92 -51.93 -0.41 0.39 16 LS Contribution 260.25 15.07 3.92 3.92 Total: -1.00 -30.43 260.25 -7.37 -37.79 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.23 Total: -3.30 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.94 Total: -16.20 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.47 Total: -39.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.65 Total: 17.21 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.43 -7.37 -37.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.367 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds