Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00204 * 2 1 4 4 C 1.53004 * 109.46974 * 124.72615 * 3 2 1 5 5 H 1.09000 * 110.63838 * 56.69792 * 4 3 2 6 6 C 1.54597 * 110.72349 * 293.55034 * 4 3 2 7 7 C 1.53994 * 105.13687 * 219.68238 * 6 4 3 8 8 N 1.47903 * 107.06000 * 358.77392 * 7 6 4 9 9 C 1.46899 * 110.99855 * 145.84087 * 8 7 6 10 10 C 1.50697 * 109.46980 * 184.22549 * 9 8 7 11 11 H 1.08001 * 120.00333 * 4.92199 * 10 9 8 12 12 C 1.37877 * 120.00158 * 184.92805 * 10 9 8 13 13 N 1.31520 * 120.00083 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99826 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47135 * 90.00331 * 14 12 10 16 16 H 1.48503 * 109.47318 * 210.00070 * 14 12 10 17 17 H 1.48499 * 109.47339 * 330.00584 * 14 12 10 18 18 C 1.48540 * 105.81700 * 25.33107 * 8 7 6 19 19 H 1.07998 * 119.99499 * 0.26631 * 1 2 3 20 20 H 1.07998 * 119.99858 * 180.27274 * 1 2 3 21 21 H 1.07998 * 119.99499 * 179.73369 * 2 1 3 22 22 H 1.08996 * 109.47000 * 244.72981 * 3 2 1 23 23 H 1.09001 * 109.47128 * 4.73324 * 3 2 1 24 24 H 1.08998 * 110.31098 * 338.60024 * 6 4 3 25 25 H 1.09003 * 110.30800 * 100.67257 * 6 4 3 26 26 H 1.08998 * 109.91714 * 118.12693 * 7 6 4 27 27 H 1.09008 * 109.91731 * 239.22536 * 7 6 4 28 28 H 1.08994 * 109.47148 * 304.22473 * 9 8 7 29 29 H 1.09004 * 109.47084 * 64.22719 * 9 8 7 30 30 H 0.97001 * 119.99724 * 179.97438 * 13 12 10 31 31 H 1.09007 * 110.66257 * 202.35851 * 18 8 7 32 32 H 1.08993 * 110.66554 * 79.22567 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0302 1.3358 1.1856 5 1 3.7078 0.4827 1.1511 6 6 2.2551 1.3650 2.5229 7 6 3.0404 2.3379 3.4218 8 7 4.2078 2.8030 2.6418 9 6 4.5376 4.1968 2.9683 10 6 5.6623 4.6675 2.0826 11 1 6.0359 4.0267 1.2976 12 6 6.2144 5.9163 2.2744 13 7 7.1956 6.3273 1.5011 14 14 5.5678 7.0248 3.6318 15 1 6.3270 6.7704 4.8824 16 1 5.7342 8.4454 3.2321 17 1 4.1284 6.7401 3.8599 18 6 3.8206 2.6680 1.2141 19 1 -0.5399 0.9353 -0.0043 20 1 -0.5400 -0.9353 0.0045 21 1 1.8500 -0.9353 0.0043 22 1 2.6252 1.4003 -0.9293 23 1 1.3583 2.1318 0.0848 24 1 1.2408 1.7313 2.3643 25 1 2.2321 0.3705 2.9686 26 1 2.4108 3.1864 3.6895 27 1 3.3735 1.8237 4.3234 28 1 3.6613 4.8247 2.8075 29 1 4.8452 4.2624 4.0120 30 1 7.5838 7.2060 1.6359 31 1 4.7051 2.6043 0.5801 32 1 3.1853 3.4989 0.9077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599526740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -6.681754 kcal Electronic energy + Delta-G solvation = -12262.969016 eV Core-core repulsion = 10222.641356 eV Total energy + Delta-G solvation = -2040.327660 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.03515 -36.35292 -34.81105 -32.71427 -30.49707 -28.78567 -26.54802 -23.73176 -21.73439 -21.21646 -20.47242 -18.90637 -16.83965 -16.81242 -15.92519 -15.62883 -15.37400 -14.59324 -14.47642 -14.11529 -13.76898 -13.58717 -13.03774 -12.73402 -12.49040 -12.23319 -12.09755 -11.88411 -11.78338 -11.51148 -11.33609 -11.26675 -10.81570 -10.11476 -9.15939 -8.31617 -6.36052 1.32723 1.33908 1.45115 1.48821 2.32022 3.00721 3.32800 3.71971 3.84941 4.01855 4.21971 4.43303 4.45893 4.57786 4.67886 4.71682 4.83993 4.86907 4.93328 4.96221 5.04399 5.17784 5.19024 5.28785 5.43881 5.51120 5.81769 5.95428 5.98867 6.21485 6.58560 6.69563 7.28086 8.84735 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061908 B = 0.007976 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.172720 B = 3509.791192 C = 3713.316172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.083 4.083 4 C -0.079 4.079 5 H 0.082 0.918 6 C -0.109 4.109 7 C 0.025 3.975 8 N -0.530 5.530 9 C 0.164 3.836 10 C -0.524 4.524 11 H 0.039 0.961 12 C 0.009 3.991 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.255 1.255 18 C 0.057 3.943 19 H 0.094 0.906 20 H 0.111 0.889 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.033 0.967 27 H 0.080 0.920 28 H -0.014 1.014 29 H 0.028 0.972 30 H 0.268 0.732 31 H 0.052 0.948 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.873 -10.335 0.862 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.170 4.170 3 C -0.120 4.120 4 C -0.098 4.098 5 H 0.100 0.900 6 C -0.147 4.147 7 C -0.102 4.102 8 N -0.254 5.254 9 C 0.036 3.964 10 C -0.562 4.562 11 H 0.057 0.943 12 C -0.189 4.189 13 N -0.586 5.586 14 Si 0.773 3.227 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.178 1.178 18 C -0.071 4.071 19 H 0.113 0.887 20 H 0.129 0.871 21 H 0.134 0.866 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.003 0.997 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.290 -10.486 0.967 16.957 hybrid contribution -0.241 1.424 0.142 1.451 sum -13.531 -9.062 1.109 16.323 Atomic orbital electron populations 1.23968 0.95697 1.02401 1.01151 1.22920 0.96235 0.97936 0.99870 1.20725 0.97509 0.96230 0.97563 1.22032 0.96313 0.96461 0.95037 0.89966 1.22381 0.98253 0.99769 0.94322 1.22998 0.91082 0.98006 0.98159 1.64586 1.34649 1.21451 1.04723 1.20084 0.94277 0.85888 0.96105 1.21290 1.17492 1.00926 1.16479 0.94294 1.25873 0.94765 0.99391 0.98838 1.70049 1.26752 1.20666 1.41171 0.85676 0.79913 0.77761 0.79364 1.18842 1.20402 1.17845 1.23000 0.97490 0.96461 0.90177 0.88735 0.87120 0.86583 0.90983 0.91798 0.90745 0.89506 0.94816 0.90207 0.99684 0.95430 0.92304 0.92949 0.95476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.38 14.32 67.78 0.97 -2.41 16 2 C -0.15 -2.98 9.07 25.64 0.23 -2.75 16 3 C -0.08 -2.00 5.06 29.85 0.15 -1.85 16 4 C -0.08 -2.31 3.08 -9.59 -0.03 -2.34 16 5 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 6 C -0.11 -2.90 6.06 31.47 0.19 -2.71 16 7 C 0.03 0.86 6.70 86.45 0.58 1.44 16 8 N -0.53 -23.18 5.34 -887.57 -4.74 -27.92 16 9 C 0.16 8.27 3.67 85.56 0.31 8.59 16 10 C -0.52 -31.32 9.24 25.60 0.24 -31.09 16 11 H 0.04 2.57 6.96 -2.91 -0.02 2.55 16 12 C 0.01 0.53 5.47 84.65 0.46 0.99 16 13 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 14 Si 0.95 45.01 27.37 68.60 1.88 46.89 16 15 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.25 -11.38 6.69 99.48 0.67 -10.72 16 18 C 0.06 2.28 5.15 86.65 0.45 2.72 16 19 H 0.09 1.62 7.84 -2.91 -0.02 1.60 16 20 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 21 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 22 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.06 1.56 7.73 -2.39 -0.02 1.54 16 24 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.03 1.14 7.67 -2.39 -0.02 1.12 16 27 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 28 H -0.01 -0.72 7.37 -2.39 -0.02 -0.74 16 29 H 0.03 1.37 7.30 -2.38 -0.02 1.35 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.05 2.35 7.28 -2.38 -0.02 2.34 16 32 H 0.03 1.13 7.92 -2.39 -0.02 1.11 16 Total: -1.00 -66.57 260.25 2.00 -64.57 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.01 Total: 5.61 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.55 Total: -29.40 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.44 Total: -87.67 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -66.57 2.00 -64.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.886 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds