Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50704 * 109.47109 * 240.00621 * 2 1 3 5 5 H 1.08005 * 119.99523 * 239.99868 * 4 2 1 6 6 C 1.37873 * 119.99995 * 59.99546 * 4 2 1 7 7 N 1.31515 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99787 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46900 * 60.00495 * 8 6 4 10 10 H 1.48501 * 109.46819 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47137 * 300.00331 * 8 6 4 12 12 N 1.46901 * 109.47342 * 120.00197 * 2 1 3 13 13 C 1.47632 * 111.00239 * 291.61561 * 12 2 1 14 14 C 1.53652 * 88.14696 * 222.09773 * 13 12 2 15 15 C 1.46693 * 111.00029 * 195.92850 * 12 2 1 16 16 C 1.53063 * 120.99671 * 264.01604 * 15 12 2 17 17 C 1.53924 * 86.83862 * 100.37790 * 16 15 12 18 18 C 1.53229 * 120.92587 * 12.07560 * 15 12 2 19 19 H 1.08998 * 109.47061 * 174.13662 * 1 2 3 20 20 H 1.08999 * 109.47029 * 294.12901 * 1 2 3 21 21 H 1.08996 * 109.47151 * 54.13051 * 1 2 3 22 22 H 0.97003 * 119.99702 * 179.97438 * 7 6 4 23 23 H 1.09001 * 113.43482 * 336.91632 * 13 12 2 24 24 H 1.08997 * 113.44013 * 107.22012 * 13 12 2 25 25 H 1.08997 * 114.20717 * 271.76038 * 14 13 12 26 26 H 1.09006 * 114.20775 * 138.92846 * 14 13 12 27 27 H 1.08996 * 113.65677 * 345.89227 * 16 15 12 28 28 H 1.09000 * 113.73826 * 214.87142 * 16 15 12 29 29 H 1.09001 * 113.58793 * 139.45765 * 17 16 15 30 30 H 1.09000 * 113.58321 * 270.18307 * 17 16 15 31 31 H 1.08995 * 113.65276 * 145.10614 * 18 15 12 32 32 H 1.09001 * 113.70209 * 14.03083 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8268 -0.4195 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 1.7174 0.0830 2.4187 14 6 3.1265 -0.2603 2.9262 15 6 3.4365 -0.3954 1.4364 16 6 4.5336 -1.3424 0.9440 17 6 4.7269 -0.3694 -0.2330 18 6 4.1436 0.7296 0.6732 19 1 -0.3633 -1.0223 -0.1050 20 1 -0.3633 0.4201 0.9379 21 1 -0.3633 0.6021 -0.8327 22 1 0.7093 1.1620 -3.4843 23 1 1.5715 1.1468 2.2308 24 1 0.9204 -0.3512 3.0223 25 1 3.1857 -1.1962 3.4818 26 1 3.6391 0.5675 3.4163 27 1 4.1632 -2.3227 0.6446 28 1 5.3949 -1.3999 1.6097 29 1 5.7717 -0.2074 -0.4979 30 1 4.1026 -0.5998 -1.0962 31 1 4.8948 1.2538 1.2638 32 1 3.4613 1.4052 0.1573 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606249547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = 62.004587 kcal Electronic energy + Delta-G solvation = -13248.677312 eV Core-core repulsion = 11211.328116 eV Total energy + Delta-G solvation = -2037.349196 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.35295 -34.73680 -33.58744 -30.42612 -26.17507 -25.13367 -25.05235 -23.86107 -20.49103 -20.04966 -17.27297 -16.15781 -15.34531 -14.92467 -14.61109 -14.04995 -13.09284 -12.44861 -12.23549 -11.78944 -11.69878 -11.28591 -11.09908 -10.94128 -10.74500 -10.65661 -10.39994 -9.94107 -9.76981 -9.63013 -9.34863 -9.10229 -8.80159 -8.39367 -7.55159 -6.00830 -4.00871 3.31764 3.36448 3.39573 4.40693 4.88012 5.14499 5.29597 5.33155 5.53272 5.73221 5.91739 6.04565 6.10780 6.27364 6.32873 6.37192 6.48685 6.63935 6.67618 6.76012 6.84600 6.91730 7.07221 7.18389 7.42831 7.53048 7.56978 7.83597 8.10792 8.32565 8.55497 9.00579 9.58878 11.06500 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.015666 C = 0.012577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.532471 B = 1786.858972 C = 2225.835488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 H 0.017 0.983 4 C -0.492 4.492 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.444 5.444 13 C -0.001 4.001 14 C -0.142 4.142 15 C 0.054 3.946 16 C -0.123 4.123 17 C -0.150 4.150 18 C -0.143 4.143 19 H 0.033 0.967 20 H 0.006 0.994 21 H 0.081 0.919 22 H 0.260 0.740 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -0.457 6.442 7.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 H 0.034 0.966 4 C -0.531 4.531 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.166 5.166 13 C -0.131 4.131 14 C -0.180 4.180 15 C -0.038 4.038 16 C -0.161 4.161 17 C -0.186 4.186 18 C -0.182 4.182 19 H 0.052 0.948 20 H 0.025 0.975 21 H 0.100 0.900 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.127 -1.028 6.172 7.496 hybrid contribution 0.451 0.476 -0.904 1.116 sum 4.578 -0.552 5.268 7.001 Atomic orbital electron populations 1.21751 0.97815 1.00374 0.98865 1.19836 0.92504 0.93268 0.87654 0.96578 1.20983 1.30348 1.12199 0.89534 0.91582 1.24910 0.95365 0.95119 0.98840 1.69886 1.36898 1.22968 1.23445 0.86694 0.79262 0.79895 0.82438 1.20230 1.21385 1.20116 1.68809 1.02284 1.42948 1.02608 1.23532 0.96674 0.97510 0.95349 1.23084 0.97344 1.01025 0.96524 1.22928 0.91890 0.96527 0.92412 1.22682 0.96932 0.98557 0.97887 1.23373 0.99782 0.95816 0.99646 1.23029 0.99326 0.97357 0.98469 0.94754 0.97532 0.90015 0.92978 0.92478 0.91230 0.89870 0.91934 0.91520 0.91417 0.93947 0.85591 0.91688 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.00 37.16 0.33 -2.90 16 2 C 0.17 4.37 1.31 -68.86 -0.09 4.28 16 3 H 0.02 0.45 5.49 -51.93 -0.29 0.16 16 4 C -0.49 -13.15 5.69 -34.44 -0.20 -13.34 16 5 H 0.07 1.79 6.45 -52.48 -0.34 1.45 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.16 11.39 55.43 0.63 -24.53 16 8 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.44 -9.87 6.13 -225.64 -1.38 -11.26 16 13 C 0.00 -0.03 6.65 -8.77 -0.06 -0.08 16 14 C -0.14 -2.37 8.21 -26.51 -0.22 -2.59 16 15 C 0.05 1.06 1.11 -137.37 -0.15 0.91 16 16 C -0.12 -2.28 7.72 -26.22 -0.20 -2.49 16 17 C -0.15 -2.99 7.43 -25.78 -0.19 -3.18 16 18 C -0.14 -2.81 7.17 -26.13 -0.19 -3.00 16 19 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 20 H 0.01 0.13 7.30 -51.93 -0.38 -0.25 16 21 H 0.08 2.19 6.25 -51.93 -0.32 1.87 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 2.94 4.46 -51.93 -0.23 2.71 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.83 5.77 -51.93 -0.30 1.53 16 LS Contribution 244.93 15.07 3.69 3.69 Total: -1.00 -27.55 244.93 -7.92 -35.47 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.78 Total: 1.40 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.06 Total: -20.90 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.75 Total: -35.79 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.55 -7.92 -35.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.476 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds