Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50704 * 109.47109 * 240.00621 * 2 1 3 5 5 H 1.08005 * 119.99523 * 239.99868 * 4 2 1 6 6 C 1.37873 * 119.99995 * 59.99546 * 4 2 1 7 7 N 1.31515 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99787 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46900 * 60.00495 * 8 6 4 10 10 H 1.48501 * 109.46819 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47137 * 300.00331 * 8 6 4 12 12 N 1.46901 * 109.47342 * 120.00197 * 2 1 3 13 13 C 1.47632 * 111.00239 * 291.61561 * 12 2 1 14 14 C 1.53652 * 88.14696 * 222.09773 * 13 12 2 15 15 C 1.46693 * 111.00029 * 195.92850 * 12 2 1 16 16 C 1.53063 * 120.99671 * 264.01604 * 15 12 2 17 17 C 1.53924 * 86.83862 * 100.37790 * 16 15 12 18 18 C 1.53229 * 120.92587 * 12.07560 * 15 12 2 19 19 H 1.08998 * 109.47061 * 174.13662 * 1 2 3 20 20 H 1.08999 * 109.47029 * 294.12901 * 1 2 3 21 21 H 1.08996 * 109.47151 * 54.13051 * 1 2 3 22 22 H 0.97003 * 119.99702 * 179.97438 * 7 6 4 23 23 H 1.09001 * 113.43482 * 336.91632 * 13 12 2 24 24 H 1.08997 * 113.44013 * 107.22012 * 13 12 2 25 25 H 1.08997 * 114.20717 * 271.76038 * 14 13 12 26 26 H 1.09006 * 114.20775 * 138.92846 * 14 13 12 27 27 H 1.08996 * 113.65677 * 345.89227 * 16 15 12 28 28 H 1.09000 * 113.73826 * 214.87142 * 16 15 12 29 29 H 1.09001 * 113.58793 * 139.45765 * 17 16 15 30 30 H 1.09000 * 113.58321 * 270.18307 * 17 16 15 31 31 H 1.08995 * 113.65276 * 145.10614 * 18 15 12 32 32 H 1.09001 * 113.70209 * 14.03083 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8268 -0.4195 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 1.7174 0.0830 2.4187 14 6 3.1265 -0.2603 2.9262 15 6 3.4365 -0.3954 1.4364 16 6 4.5336 -1.3424 0.9440 17 6 4.7269 -0.3694 -0.2330 18 6 4.1436 0.7296 0.6732 19 1 -0.3633 -1.0223 -0.1050 20 1 -0.3633 0.4201 0.9379 21 1 -0.3633 0.6021 -0.8327 22 1 0.7093 1.1620 -3.4843 23 1 1.5715 1.1468 2.2308 24 1 0.9204 -0.3512 3.0223 25 1 3.1857 -1.1962 3.4818 26 1 3.6391 0.5675 3.4163 27 1 4.1632 -2.3227 0.6446 28 1 5.3949 -1.3999 1.6097 29 1 5.7717 -0.2074 -0.4979 30 1 4.1026 -0.5998 -1.0962 31 1 4.8948 1.2538 1.2638 32 1 3.4613 1.4052 0.1573 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606249547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = 44.054416 kcal Electronic energy + Delta-G solvation = -13249.455690 eV Core-core repulsion = 11211.328116 eV Total energy + Delta-G solvation = -2038.127574 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.92581 -36.35653 -35.52169 -32.35827 -27.92132 -27.15460 -26.57704 -25.40407 -22.19007 -21.75191 -18.93621 -18.09041 -17.08830 -16.65782 -16.16190 -15.78489 -14.93565 -14.07704 -13.94742 -13.64574 -13.28800 -12.99863 -12.76959 -12.68735 -12.57875 -12.36664 -12.29736 -11.78811 -11.41541 -11.35648 -10.96872 -10.90041 -10.51291 -10.40703 -9.28683 -8.08824 -6.13487 1.40609 1.41572 1.48523 2.42278 3.19206 3.35827 3.71054 3.83506 4.02096 4.20391 4.43049 4.55537 4.62230 4.77642 4.85619 4.89403 4.96009 5.00334 5.02992 5.05798 5.20361 5.26112 5.34434 5.49376 5.55529 5.61694 5.78214 5.91961 6.16941 6.36424 6.67628 6.93909 7.49067 8.97797 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.015666 C = 0.012577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.532471 B = 1786.858972 C = 2225.835488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.181 3.819 3 H -0.008 1.008 4 C -0.492 4.492 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.468 5.468 13 C -0.006 4.006 14 C -0.117 4.117 15 C 0.039 3.961 16 C -0.111 4.111 17 C -0.157 4.157 18 C -0.138 4.138 19 H 0.023 0.977 20 H 0.026 0.974 21 H 0.057 0.943 22 H 0.259 0.741 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -1.009 7.887 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 H 0.010 0.990 4 C -0.530 4.530 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 N -0.190 5.190 13 C -0.135 4.135 14 C -0.154 4.154 15 C -0.052 4.052 16 C -0.149 4.149 17 C -0.194 4.194 18 C -0.177 4.177 19 H 0.042 0.958 20 H 0.045 0.955 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.580 -1.589 7.628 9.584 hybrid contribution 0.012 0.656 -1.310 1.465 sum 5.593 -0.932 6.318 8.489 Atomic orbital electron populations 1.21601 0.98138 0.99233 0.98907 1.19608 0.92196 0.92042 0.88824 0.99047 1.21148 1.29672 1.11668 0.90511 0.92422 1.25578 0.95733 0.95808 1.01437 1.70009 1.38161 1.24270 1.23773 0.85812 0.79082 0.78724 0.79314 1.20094 1.21237 1.19304 1.68756 1.04494 1.43358 1.02394 1.23613 0.98986 0.96821 0.94105 1.23023 0.95018 1.02793 0.94573 1.23122 0.90696 0.96751 0.94634 1.22684 0.97684 0.96998 0.97524 1.23239 1.00273 0.96890 0.98993 1.23011 0.99372 0.96720 0.98566 0.95769 0.95508 0.92399 0.93187 0.93212 0.89989 0.88120 0.89187 0.93112 0.87791 0.91773 0.89403 0.88420 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 9.00 71.98 0.65 -5.46 16 2 C 0.18 9.20 1.31 44.17 0.06 9.26 16 3 H -0.01 -0.43 5.49 -2.39 -0.01 -0.45 16 4 C -0.49 -26.75 5.69 25.60 0.15 -26.61 16 5 H 0.06 3.18 6.45 -2.91 -0.02 3.16 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.34 11.39 21.45 0.24 -53.10 16 8 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.47 -20.38 6.13 -867.81 -5.32 -25.70 16 13 C -0.01 -0.22 6.65 82.70 0.55 0.33 16 14 C -0.12 -3.44 8.21 30.74 0.25 -3.19 16 15 C 0.04 1.46 1.11 -0.09 0.00 1.46 16 16 C -0.11 -3.84 7.72 30.93 0.24 -3.60 16 17 C -0.16 -6.07 7.43 31.21 0.23 -5.84 16 18 C -0.14 -5.22 7.17 30.98 0.22 -5.00 16 19 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.03 1.19 7.30 -2.39 -0.02 1.17 16 21 H 0.06 3.19 6.25 -2.39 -0.01 3.17 16 22 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 23 H 0.05 1.84 7.79 -2.39 -0.02 1.83 16 24 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 4.12 4.46 -2.39 -0.01 4.11 16 31 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.04 2.04 5.77 -2.39 -0.01 2.02 16 Total: -1.00 -59.73 244.93 0.83 -58.90 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.09 Total: 11.38 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 2.79 Total: -37.51 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -5.08 Total: -78.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.73 0.83 -58.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.953 kcal (2) G-P(sol) polarization free energy of solvation -59.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds