Wall clock time and date at job start Mon Mar 30 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47271 * 2 1 4 4 C 1.50705 * 109.47181 * 240.00914 * 2 1 3 5 5 H 1.07998 * 119.99982 * 239.99933 * 4 2 1 6 6 C 1.37882 * 120.00063 * 59.99640 * 4 2 1 7 7 N 1.31512 * 119.99676 * 179.72869 * 6 4 2 8 8 Si 1.86790 * 119.99890 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47525 * 269.72604 * 8 6 4 10 10 H 1.48494 * 109.47379 * 29.72804 * 8 6 4 11 11 H 1.48506 * 109.47248 * 149.72623 * 8 6 4 12 12 N 1.46900 * 109.47523 * 120.00649 * 2 1 3 13 13 C 1.46902 * 110.99738 * 236.10082 * 12 2 1 14 14 C 1.52995 * 110.91314 * 300.42776 * 13 12 2 15 15 C 1.54637 * 111.03201 * 176.46398 * 13 12 2 16 16 C 1.51175 * 104.69114 * 217.36058 * 15 13 12 17 17 C 1.30528 * 111.11990 * 16.38320 * 16 15 13 18 18 C 1.51101 * 111.10214 * 0.03228 * 17 16 15 19 19 H 1.08997 * 109.47127 * 55.38686 * 1 2 3 20 20 H 1.08994 * 109.47023 * 175.38813 * 1 2 3 21 21 H 1.08992 * 109.46772 * 295.38672 * 1 2 3 22 22 H 0.97001 * 119.99658 * 180.27525 * 7 6 4 23 23 H 1.00899 * 110.99823 * 0.05316 * 12 2 1 24 24 H 1.09000 * 109.47319 * 60.95806 * 14 13 12 25 25 H 1.09007 * 109.46990 * 180.95592 * 14 13 12 26 26 H 1.09001 * 109.47056 * 300.95264 * 14 13 12 27 27 H 1.09001 * 110.38741 * 336.14302 * 15 13 12 28 28 H 1.08991 * 110.38924 * 98.52310 * 15 13 12 29 29 H 1.07993 * 124.43137 * 196.42706 * 16 15 13 30 30 H 1.07998 * 124.44665 * 180.02562 * 17 16 15 31 31 H 1.09005 * 110.38291 * 224.74915 * 18 17 16 32 32 H 1.09002 * 110.48264 * 102.42583 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1317 6 6 1.6992 -0.2390 -2.4829 7 7 2.1421 -0.8557 -3.5567 8 14 0.6259 1.2801 -2.6540 9 1 -0.8017 0.8743 -2.7058 10 1 0.8442 2.1743 -1.4888 11 1 0.9816 1.9994 -3.9035 12 7 2.0198 -0.6926 1.1993 13 6 2.9164 0.1725 1.9775 14 6 4.1252 0.5986 1.1420 15 6 3.3625 -0.5231 3.2846 16 6 3.4044 0.5840 4.3131 17 6 2.7492 1.6347 3.9002 18 6 2.1602 1.4038 2.5280 19 1 -0.3633 0.5837 -0.8457 20 1 -0.3633 -1.0243 -0.0826 21 1 -0.3632 0.4406 0.9284 22 1 1.9110 -0.5219 -4.4376 23 1 1.2522 -1.0209 1.7660 24 1 3.7857 1.1615 0.2725 25 1 4.7821 1.2245 1.7462 26 1 4.6691 -0.2865 0.8121 27 1 2.6387 -1.2844 3.5757 28 1 4.3510 -0.9653 3.1612 29 1 3.9108 0.5148 5.2644 30 1 2.6420 2.5488 4.4651 31 1 2.3317 2.2711 1.8903 32 1 1.0933 1.1926 2.6014 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642861884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:29 Heat of formation + Delta-G solvation = 2.352725 kcal Electronic energy + Delta-G solvation = -12817.760534 eV Core-core repulsion = 10777.824639 eV Total energy + Delta-G solvation = -2039.935895 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53135 -36.84460 -34.21275 -32.00602 -29.26577 -29.08008 -27.16046 -26.18304 -22.27477 -20.10160 -19.63230 -18.61419 -17.22243 -16.73197 -16.04541 -15.52167 -14.78817 -14.52636 -14.45284 -14.10036 -13.33817 -12.95672 -12.91310 -12.87225 -12.63851 -12.48379 -12.25391 -12.01640 -11.92093 -11.64497 -11.35629 -11.13640 -10.69576 -9.74837 -8.95780 -8.23229 -6.23108 1.28621 1.33834 1.43131 1.43564 2.33406 3.10179 3.38178 3.77210 3.93067 4.12542 4.40608 4.47852 4.54527 4.56018 4.69072 4.73310 4.85969 4.87426 4.93707 5.04454 5.09439 5.13403 5.29579 5.40719 5.47783 5.65559 5.73578 6.08929 6.14447 6.69828 6.83722 6.92946 7.40720 8.94707 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053554 B = 0.011196 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.709767 B = 2500.331117 C = 2650.893523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.189 3.811 3 H 0.017 0.983 4 C -0.487 4.487 5 H 0.032 0.968 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.251 1.251 11 H -0.301 1.301 12 N -0.674 5.674 13 C 0.107 3.893 14 C -0.120 4.120 15 C -0.089 4.089 16 C -0.159 4.159 17 C -0.168 4.168 18 C -0.131 4.131 19 H 0.035 0.965 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.263 0.737 23 H 0.336 0.664 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.056 0.944 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 6.101 15.289 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.035 0.965 4 C -0.526 4.526 5 H 0.050 0.950 6 C -0.192 4.192 7 N -0.597 5.597 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.175 1.175 11 H -0.228 1.228 12 N -0.304 5.304 13 C 0.015 3.985 14 C -0.177 4.177 15 C -0.127 4.127 16 C -0.176 4.176 17 C -0.186 4.186 18 C -0.170 4.170 19 H 0.054 0.946 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.155 0.845 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.261 5.760 14.759 15.846 hybrid contribution -1.013 0.956 -0.552 1.498 sum -1.273 6.716 14.207 15.766 Atomic orbital electron populations 1.22542 0.98366 1.01496 1.00067 1.19392 0.90640 0.93054 0.88924 0.96484 1.21353 1.29396 1.11822 0.90041 0.95014 1.25806 0.97837 0.99974 0.95553 1.70057 1.48401 1.42772 0.98428 0.85890 0.79278 0.80301 0.77067 1.19343 1.17536 1.22850 1.60423 1.22326 1.39807 1.07824 1.21863 0.93243 0.90894 0.92500 1.21623 0.96873 1.00546 0.98707 1.21415 1.01970 0.97508 0.91778 1.23425 0.99795 0.94709 0.99719 1.23277 0.99496 0.99612 0.96259 1.22199 0.99828 0.99152 0.95825 0.94612 0.92506 0.91762 0.92851 0.84532 0.94511 0.91083 0.93678 0.90144 0.90872 0.83392 0.84170 0.92487 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.81 8.42 71.98 0.61 -6.21 16 2 C 0.19 8.71 1.32 44.17 0.06 8.77 16 3 H 0.02 0.82 4.77 -2.39 -0.01 0.81 16 4 C -0.49 -28.28 9.42 25.60 0.24 -28.04 16 5 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 6 C 0.00 0.24 5.45 84.66 0.46 0.70 16 7 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 8 Si 0.95 45.57 24.32 68.60 1.67 47.24 16 9 H -0.27 -12.21 6.92 99.48 0.69 -11.52 16 10 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 N -0.67 -26.88 6.09 -446.64 -2.72 -29.60 16 13 C 0.11 3.59 0.81 4.64 0.00 3.60 16 14 C -0.12 -4.41 8.32 71.98 0.60 -3.81 16 15 C -0.09 -2.42 6.09 30.56 0.19 -2.23 16 16 C -0.16 -3.49 10.78 26.28 0.28 -3.21 16 17 C -0.17 -3.90 10.78 26.26 0.28 -3.62 16 18 C -0.13 -3.86 5.05 30.53 0.15 -3.70 16 19 H 0.04 1.51 3.41 -2.39 -0.01 1.50 16 20 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 22 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 23 H 0.34 11.85 7.90 -89.69 -0.71 11.14 16 24 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 25 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.11 7.92 -2.39 -0.02 2.09 16 28 H 0.07 1.97 7.91 -2.39 -0.02 1.95 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.06 1.78 7.79 -2.38 -0.02 1.76 16 32 H 0.07 2.06 7.83 -2.39 -0.02 2.04 16 Total: -1.00 -66.02 250.33 2.43 -63.59 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.31 Total: 17.35 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 2.88 Total: -37.74 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -2.42 Total: -90.43 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Total: -66.02 2.43 -63.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642861884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.943 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds