Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47117 * 239.99935 * 3 2 1 5 5 H 1.48504 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 119.99630 * 3 2 1 7 7 C 1.37877 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46878 * 185.22685 * 11 10 9 13 13 C 1.48539 * 111.00282 * 183.65950 * 12 11 10 14 14 C 1.54933 * 103.23180 * 159.65047 * 13 12 11 15 15 C 1.54557 * 102.94345 * 322.53547 * 14 13 12 16 16 H 1.09000 * 117.58385 * 242.98788 * 15 14 13 17 17 C 1.52946 * 118.19868 * 85.56961 * 15 14 13 18 18 C 1.47939 * 111.00329 * 301.03333 * 12 11 10 19 19 H 1.09004 * 117.37142 * 355.70247 * 18 12 11 20 20 H 0.97003 * 120.00188 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46531 * 60.00341 * 9 7 2 22 22 H 1.08997 * 109.47613 * 300.00293 * 9 7 2 23 23 H 1.08994 * 109.46802 * 60.00175 * 10 9 7 24 24 H 1.08997 * 109.47046 * 300.00533 * 10 9 7 25 25 H 1.09000 * 109.47238 * 65.22879 * 11 10 9 26 26 H 1.08997 * 109.47412 * 305.22525 * 11 10 9 27 27 H 1.09003 * 110.66073 * 41.21610 * 13 12 11 28 28 H 1.08997 * 110.66321 * 278.08851 * 13 12 11 29 29 H 1.09003 * 110.72029 * 80.89535 * 14 13 12 30 30 H 1.08996 * 110.71951 * 204.17664 * 14 13 12 31 31 H 1.08997 * 117.45281 * 160.64777 * 17 15 14 32 32 H 1.08996 * 117.45215 * 15.87781 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 7 2.4298 -6.1007 0.1250 13 6 1.7308 -7.4086 0.0399 14 6 2.8654 -8.3931 -0.3394 15 6 3.7341 -7.5624 -1.3110 16 1 3.8218 -7.9164 -2.3381 17 6 4.8078 -6.6481 -0.7189 18 6 3.4067 -6.0931 -0.9860 19 1 3.2697 -5.3468 -1.7687 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8718 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8904 25 1 0.9260 -5.0861 -0.9345 26 1 0.7850 -5.0056 0.8380 27 1 0.9656 -7.3860 -0.7361 28 1 1.2958 -7.6755 1.0030 29 1 3.4389 -8.6788 0.5425 30 1 2.4612 -9.2730 -0.8398 31 1 5.6115 -6.3233 -1.3798 32 1 5.0927 -6.8148 0.3198 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685967994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = 20.815708 kcal Electronic energy + Delta-G solvation = -12096.473531 eV Core-core repulsion = 10057.338250 eV Total energy + Delta-G solvation = -2039.135280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63505 -34.78647 -32.92168 -31.38652 -29.52479 -25.97466 -23.07831 -22.80376 -20.73713 -20.42332 -19.15303 -16.57464 -15.88439 -15.28094 -14.45130 -14.10806 -13.65069 -13.19267 -12.69935 -12.31929 -12.17588 -12.02844 -11.36476 -11.18096 -10.95540 -10.76310 -10.52202 -10.43394 -10.25328 -9.90571 -9.53591 -9.28205 -9.02553 -8.30657 -7.99628 -5.96195 -3.98185 3.36136 3.39967 3.42952 3.65354 4.16312 4.49390 4.77582 4.82922 5.17517 5.31545 5.34265 5.39463 5.46527 5.75017 5.77578 5.85220 5.85584 5.87718 6.04995 6.14810 6.30180 6.35540 6.75423 6.82848 7.10698 7.25326 7.44817 7.72311 7.87709 8.04421 8.47978 9.08812 9.65539 11.15303 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069751 B = 0.006757 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.334029 B = 4143.106055 C = 4441.712380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.049 3.951 12 N -0.496 5.496 13 C 0.035 3.965 14 C -0.093 4.093 15 C -0.192 4.192 16 H 0.107 0.893 17 C -0.139 4.139 18 C -0.001 4.001 19 H 0.113 0.887 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -14.324 -1.832 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.078 4.078 12 N -0.219 5.219 13 C -0.092 4.092 14 C -0.131 4.131 15 C -0.211 4.211 16 H 0.125 0.875 17 C -0.177 4.177 18 C -0.110 4.110 19 H 0.131 0.869 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.310 -14.127 -1.314 15.149 hybrid contribution -0.052 0.954 -0.835 1.269 sum 5.258 -13.172 -2.149 14.345 Atomic orbital electron populations 1.69958 1.06063 1.26640 1.51027 1.25028 0.94843 0.99229 0.95398 0.86657 0.79577 0.83141 0.78621 1.20284 1.21304 1.20214 1.21225 0.93021 0.91074 1.50370 0.92740 1.19074 0.94023 0.91401 0.97074 1.21658 0.99070 0.92721 1.00797 1.22404 0.94247 0.91254 0.99906 1.64343 1.14146 1.02140 1.41310 1.23485 0.95940 0.89059 1.00736 1.22062 0.95709 0.96939 0.98353 1.23610 1.04031 0.93384 1.00076 0.87457 1.23082 0.91723 1.00975 1.01944 1.23574 0.95596 0.96115 0.95682 0.86897 0.93000 0.96856 0.96578 0.92547 0.93550 0.95253 0.90911 0.93790 0.90104 0.90890 0.91055 0.88409 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.27 4.92 -26.73 -0.13 -2.41 16 11 C 0.05 0.91 4.94 -3.83 -0.02 0.89 16 12 N -0.50 -8.07 5.30 -222.50 -1.18 -9.25 16 13 C 0.04 0.47 6.56 -1.90 -0.01 0.46 16 14 C -0.09 -1.05 6.85 -24.89 -0.17 -1.22 16 15 C -0.19 -2.33 7.05 -89.31 -0.63 -2.96 16 16 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -1.77 10.23 -26.73 -0.27 -2.04 16 18 C 0.00 -0.01 5.70 -66.59 -0.38 -0.39 16 19 H 0.11 1.79 6.93 -51.93 -0.36 1.43 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 25 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.04 0.58 7.95 -51.93 -0.41 0.16 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 262.35 15.07 3.95 3.95 Total: -1.00 -30.55 262.35 -8.98 -39.53 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.31 Total: -3.41 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.17 Total: -21.11 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.44 Total: -36.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.55 -8.98 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.349 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds