Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47117 * 239.99935 * 3 2 1 5 5 H 1.48504 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 119.99630 * 3 2 1 7 7 C 1.37877 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46878 * 185.22685 * 11 10 9 13 13 C 1.48539 * 111.00282 * 183.65950 * 12 11 10 14 14 C 1.54933 * 103.23180 * 159.65047 * 13 12 11 15 15 C 1.54557 * 102.94345 * 322.53547 * 14 13 12 16 16 H 1.09000 * 117.58385 * 242.98788 * 15 14 13 17 17 C 1.52946 * 118.19868 * 85.56961 * 15 14 13 18 18 C 1.47939 * 111.00329 * 301.03333 * 12 11 10 19 19 H 1.09004 * 117.37142 * 355.70247 * 18 12 11 20 20 H 0.97003 * 120.00188 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46531 * 60.00341 * 9 7 2 22 22 H 1.08997 * 109.47613 * 300.00293 * 9 7 2 23 23 H 1.08994 * 109.46802 * 60.00175 * 10 9 7 24 24 H 1.08997 * 109.47046 * 300.00533 * 10 9 7 25 25 H 1.09000 * 109.47238 * 65.22879 * 11 10 9 26 26 H 1.08997 * 109.47412 * 305.22525 * 11 10 9 27 27 H 1.09003 * 110.66073 * 41.21610 * 13 12 11 28 28 H 1.08997 * 110.66321 * 278.08851 * 13 12 11 29 29 H 1.09003 * 110.72029 * 80.89535 * 14 13 12 30 30 H 1.08996 * 110.71951 * 204.17664 * 14 13 12 31 31 H 1.08997 * 117.45281 * 160.64777 * 17 15 14 32 32 H 1.08996 * 117.45215 * 15.87781 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 7 2.4298 -6.1007 0.1250 13 6 1.7308 -7.4086 0.0399 14 6 2.8654 -8.3931 -0.3394 15 6 3.7341 -7.5624 -1.3110 16 1 3.8218 -7.9164 -2.3381 17 6 4.8078 -6.6481 -0.7189 18 6 3.4067 -6.0931 -0.9860 19 1 3.2697 -5.3468 -1.7687 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8718 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8904 25 1 0.9260 -5.0861 -0.9345 26 1 0.7850 -5.0056 0.8380 27 1 0.9656 -7.3860 -0.7361 28 1 1.2958 -7.6755 1.0030 29 1 3.4389 -8.6788 0.5425 30 1 2.4612 -9.2730 -0.8398 31 1 5.6115 -6.3233 -1.3798 32 1 5.0927 -6.8148 0.3198 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685967994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = 1.812799 kcal Electronic energy + Delta-G solvation = -12097.297559 eV Core-core repulsion = 10057.338250 eV Total energy + Delta-G solvation = -2039.959308 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74110 -36.50573 -34.75579 -32.90980 -30.94411 -27.82995 -24.70012 -24.03140 -22.39247 -21.46475 -20.52592 -18.54228 -17.33020 -16.56738 -16.46270 -15.54661 -14.91273 -14.66279 -14.08822 -13.87559 -13.62163 -13.51489 -12.97628 -12.82805 -12.52865 -12.33765 -12.17379 -11.90773 -11.59077 -11.41803 -11.23544 -11.08813 -10.82525 -10.55776 -9.20782 -8.21342 -6.32920 1.38974 1.42680 1.50701 2.40126 2.60498 3.03008 3.11436 3.74270 3.81078 4.10937 4.21633 4.27241 4.31512 4.43782 4.47388 4.68526 4.71719 4.86340 4.93125 5.00234 5.06519 5.07770 5.11971 5.23387 5.37623 5.49536 5.71304 5.83177 5.97496 6.10794 6.25864 6.83163 7.36304 8.90563 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069751 B = 0.006757 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.334029 B = 4143.106055 C = 4441.712380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.086 4.086 11 C 0.062 3.938 12 N -0.506 5.506 13 C 0.030 3.970 14 C -0.088 4.088 15 C -0.170 4.170 16 H 0.126 0.874 17 C -0.133 4.133 18 C -0.039 4.039 19 H 0.098 0.902 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.008 1.008 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -15.128 -2.133 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.124 4.124 11 C -0.067 4.067 12 N -0.230 5.230 13 C -0.097 4.097 14 C -0.125 4.125 15 C -0.189 4.189 16 H 0.144 0.856 17 C -0.171 4.171 18 C -0.148 4.148 19 H 0.115 0.885 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.010 0.990 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.696 -14.953 -1.616 16.463 hybrid contribution -0.503 1.164 -0.746 1.472 sum 6.192 -13.789 -2.362 15.299 Atomic orbital electron populations 1.70091 1.07832 1.27918 1.51565 1.26007 0.95809 1.03434 0.94580 0.85476 0.78286 0.77916 0.79228 1.19109 1.20577 1.19166 1.21653 0.93479 0.92424 1.50805 0.92385 1.18971 0.94361 0.93085 0.94730 1.21373 0.97854 0.92808 1.00393 1.22108 0.94164 0.90818 0.99567 1.64333 1.13987 1.02476 1.42200 1.23619 0.96695 0.88068 1.01350 1.22102 0.94753 0.97036 0.98633 1.23788 1.02543 0.91356 1.01216 0.85570 1.23172 0.91177 1.00410 1.02309 1.23616 0.97052 0.98315 0.95782 0.88468 0.92682 0.99114 0.98973 0.93287 0.93384 0.95535 0.91386 0.93743 0.89338 0.90380 0.88435 0.86804 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.45 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.85 4.92 30.59 0.15 -3.70 16 11 C 0.06 2.31 4.94 86.30 0.43 2.73 16 12 N -0.51 -16.14 5.30 -857.86 -4.55 -20.69 16 13 C 0.03 0.74 6.56 86.65 0.57 1.31 16 14 C -0.09 -1.72 6.85 31.79 0.22 -1.50 16 15 C -0.17 -3.66 7.05 -9.94 -0.07 -3.73 16 16 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.13 -3.11 10.23 30.60 0.31 -2.79 16 18 C -0.04 -1.12 5.70 45.07 0.26 -0.87 16 19 H 0.10 3.08 6.93 -2.38 -0.02 3.07 16 20 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 23 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.05 2.10 6.73 -2.39 -0.02 2.08 16 25 H 0.03 0.99 8.04 -2.39 -0.02 0.97 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.04 1.10 7.95 -2.39 -0.02 1.08 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.57 262.35 1.53 -64.04 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.06 Total: 5.91 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.71 Total: -38.63 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -4.26 Total: -78.56 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.57 1.53 -64.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.855 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds