Wall clock time and date at job start Mon Mar 30 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99983 * 3 2 1 5 5 H 1.48496 * 109.46724 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99960 * 3 2 1 7 7 C 1.40311 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00433 * 179.97438 * 7 2 1 9 9 C 1.40079 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.35028 * 119.99917 * 179.97438 * 9 7 2 11 11 C 1.50701 * 119.99791 * 179.72062 * 10 9 7 12 12 C 1.53000 * 109.46860 * 125.28100 * 11 10 9 13 13 C 1.53121 * 109.52233 * 294.87256 * 12 11 10 14 14 C 1.53047 * 109.27462 * 182.50249 * 13 12 11 15 15 N 1.46848 * 109.57250 * 59.08833 * 14 13 12 16 16 C 1.46848 * 111.19789 * 298.28308 * 15 14 13 17 17 C 1.53042 * 109.51733 * 61.74632 * 16 15 14 18 18 H 0.96995 * 119.99819 * 359.97438 * 1 2 3 19 19 H 1.08002 * 119.99697 * 359.97438 * 9 7 2 20 20 H 1.08002 * 120.00386 * 0.02562 * 10 9 7 21 21 H 1.08998 * 109.47474 * 245.27856 * 11 10 9 22 22 H 1.09001 * 109.47291 * 5.28143 * 11 10 9 23 23 H 1.08999 * 109.52757 * 54.99815 * 12 11 10 24 24 H 1.08998 * 109.50598 * 302.38482 * 13 12 11 25 25 H 1.08999 * 109.50456 * 62.50331 * 13 12 11 26 26 H 1.09002 * 109.41547 * 299.07032 * 14 13 12 27 27 H 1.09001 * 109.45215 * 179.12713 * 14 13 12 28 28 H 1.00898 * 111.00171 * 62.38793 * 15 14 13 29 29 H 1.08995 * 109.46416 * 301.73411 * 16 15 14 30 30 H 1.08997 * 109.45036 * 181.75136 * 16 15 14 31 31 H 1.09000 * 109.50093 * 180.87697 * 17 16 15 32 32 H 1.09005 * 109.53429 * 60.78153 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0085 -1.2151 0.0005 8 1 3.0884 -1.2152 0.0001 9 6 1.3081 -2.4282 0.0005 10 6 1.9832 -3.5976 0.0005 11 6 1.2297 -4.9027 0.0069 12 6 1.6913 -5.7638 -1.1705 13 6 1.3035 -5.0824 -2.4858 14 6 1.7119 -5.9775 -3.6581 15 7 1.0397 -7.2779 -3.5416 16 6 1.4347 -7.9712 -2.3088 17 6 1.0166 -7.1363 -1.0962 18 1 -0.4849 0.8400 0.0004 19 1 0.2281 -2.4282 0.0005 20 1 3.0632 -3.5977 0.0010 21 1 1.4241 -5.4300 0.9408 22 1 0.1614 -4.7059 -0.0837 23 1 2.7735 -5.8871 -1.1295 24 1 0.2255 -4.9229 -2.5091 25 1 1.8155 -4.1233 -2.5635 26 1 2.7919 -6.1243 -3.6429 27 1 1.4231 -5.5022 -4.5955 28 1 0.0375 -7.1727 -3.5921 29 1 2.5159 -8.1085 -2.2998 30 1 0.9445 -8.9439 -2.2664 31 1 1.3238 -7.6437 -0.1817 32 1 -0.0661 -7.0102 -1.0963 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687678602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:41 Heat of formation + Delta-G solvation = -25.945169 kcal Electronic energy + Delta-G solvation = -12105.701483 eV Core-core repulsion = 10064.538499 eV Total energy + Delta-G solvation = -2041.162984 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.57026 -34.53128 -33.20050 -30.69399 -30.29804 -27.02943 -23.96054 -22.47170 -21.56142 -19.62797 -18.26120 -16.82896 -15.66326 -14.82266 -14.38022 -14.00798 -13.80716 -13.37707 -12.89026 -12.29124 -12.03612 -11.76816 -11.30739 -11.24779 -10.95705 -10.87849 -10.65724 -10.37370 -10.00963 -9.83974 -9.48448 -9.42991 -9.22597 -8.11111 -7.56277 -6.69983 -4.19632 3.00273 3.09825 3.14019 3.94088 4.01185 4.54653 5.09728 5.27679 5.41677 5.51437 5.60082 5.70386 5.78398 5.88059 6.08817 6.21625 6.29232 6.41356 6.54565 6.66841 6.77889 6.98913 7.01083 7.23443 7.25626 7.30046 7.40240 7.55241 8.05773 8.47118 8.73967 9.14241 9.33545 10.33949 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.065467 B = 0.006899 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.593323 B = 4057.380233 C = 4203.603609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.066 0.934 9 C 0.053 3.947 10 C -0.418 4.418 11 C -0.033 4.033 12 C -0.078 4.078 13 C -0.142 4.142 14 C 0.054 3.946 15 N -0.690 5.690 16 C 0.057 3.943 17 C -0.154 4.154 18 H 0.280 0.720 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.027 0.973 22 H 0.038 0.962 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.336 0.664 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -8.173 -3.995 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.440 4.440 11 C -0.070 4.070 12 C -0.097 4.097 13 C -0.181 4.181 14 C -0.075 4.075 15 N -0.318 5.318 16 C -0.073 4.073 17 C -0.194 4.194 18 H 0.090 0.910 19 H 0.094 0.906 20 H 0.088 0.912 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.832 -8.343 -4.404 9.471 hybrid contribution -0.139 1.440 0.789 1.648 sum 0.693 -6.904 -3.615 7.823 Atomic orbital electron populations 1.69560 1.07649 1.29381 1.38710 1.26093 0.94792 1.01619 0.91859 0.86333 0.79943 0.80254 0.79872 1.19018 1.20466 1.19024 1.19546 0.94464 0.90941 1.44565 0.91544 1.19910 0.96413 0.91990 0.88444 1.21929 0.96091 0.91888 1.34096 1.20009 0.97753 0.95265 0.94009 1.21181 0.99229 0.93055 0.96234 1.22178 1.01116 1.00218 0.94604 1.22072 0.99168 0.88379 0.97929 1.60756 1.12425 1.21670 1.36953 1.21997 1.00919 0.96466 0.87879 1.22374 1.00552 0.97566 0.98874 0.90963 0.90551 0.91228 0.95475 0.94370 0.92272 0.92810 0.90209 0.91393 0.91317 0.84689 0.91351 0.91535 0.92116 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.55 12.86 55.57 0.71 -21.84 16 2 C 0.07 1.91 5.50 -17.26 -0.09 1.82 16 3 Si 0.91 19.71 29.56 -169.99 -5.03 14.68 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.46 -13.09 9.05 -38.11 -0.35 -13.43 16 8 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 9 C 0.05 1.46 9.00 -40.03 -0.36 1.10 16 10 C -0.42 -10.56 8.31 -35.45 -0.29 -10.86 16 11 C -0.03 -0.70 5.15 -27.88 -0.14 -0.85 16 12 C -0.08 -1.40 2.24 -90.50 -0.20 -1.60 16 13 C -0.14 -2.49 5.14 -26.64 -0.14 -2.62 16 14 C 0.05 0.79 6.55 -3.83 -0.03 0.77 16 15 N -0.69 -9.37 6.87 -113.81 -0.78 -10.16 16 16 C 0.06 0.75 6.55 -3.83 -0.03 0.72 16 17 C -0.15 -2.27 5.36 -26.65 -0.14 -2.41 16 18 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 19 H 0.08 2.22 7.27 -52.49 -0.38 1.84 16 20 H 0.07 1.81 8.05 -52.49 -0.42 1.39 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.04 0.83 7.85 -51.93 -0.41 0.42 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.60 7.47 -51.93 -0.39 1.21 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.34 4.25 8.86 -39.29 -0.35 3.90 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -27.58 262.41 -8.21 -35.79 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.30 Total: 4.94 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.77 Total: -27.37 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: -0.07 Total: -32.00 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.58 -8.21 -35.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.843 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds