Wall clock time and date at job start Mon Mar 30 2020 01:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46876 * 2 1 4 4 C 1.36938 * 119.99406 * 300.99828 * 3 2 1 5 5 H 1.08000 * 120.00359 * 353.33958 * 4 3 2 6 6 C 1.38813 * 119.99744 * 173.61255 * 4 3 2 7 7 N 1.31622 * 120.00222 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47107 * 60.00584 * 8 6 4 10 10 H 1.48507 * 109.46852 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47285 * 300.00185 * 8 6 4 12 12 C 1.52994 * 109.47336 * 239.99891 * 2 1 3 13 13 C 1.53002 * 117.49683 * 254.30838 * 12 2 1 14 14 C 1.53003 * 117.49999 * 185.64913 * 12 2 1 15 15 C 1.52995 * 109.47036 * 119.99408 * 2 1 3 16 16 C 1.52998 * 117.50282 * 13.74980 * 15 2 1 17 17 C 1.53003 * 117.50278 * 305.08570 * 15 2 1 18 18 H 1.08995 * 109.47773 * 60.00358 * 1 2 3 19 19 H 1.09005 * 109.47117 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47236 * 299.99948 * 1 2 3 21 21 H 0.96995 * 120.00309 * 121.00239 * 3 2 1 22 22 H 0.96993 * 120.00407 * 179.97438 * 7 6 4 23 23 H 1.09002 * 115.55044 * 39.97012 * 12 2 1 24 24 H 1.08996 * 117.50088 * 359.97438 * 13 12 2 25 25 H 1.09004 * 117.49900 * 145.01494 * 13 12 2 26 26 H 1.08998 * 117.49224 * 214.97563 * 14 12 2 27 27 H 1.08994 * 117.49948 * 359.97414 * 14 12 2 28 28 H 1.09011 * 115.54820 * 159.42035 * 15 2 1 29 29 H 1.09002 * 117.49729 * 359.97438 * 16 15 2 30 30 H 1.08998 * 117.50022 * 145.01878 * 16 15 2 31 31 H 1.08997 * 117.50041 * 214.98234 * 17 15 2 32 32 H 1.08995 * 117.49555 * 359.97438 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.6706 2.2303 -1.0166 5 1 1.1275 1.8553 -1.8715 6 6 2.0211 3.5718 -0.9510 7 7 2.6882 4.0277 0.0881 8 14 1.5475 4.7299 -2.3381 9 1 0.0697 4.7520 -2.4816 10 1 2.0358 6.0979 -2.0292 11 1 2.1610 4.2604 -3.6062 12 6 2.0400 -0.7212 -1.2492 13 6 2.6216 -2.1246 -1.0666 14 6 3.5488 -0.9449 -1.3693 15 6 2.0399 -0.7211 1.2493 16 6 1.0326 -1.5531 2.0455 17 6 1.5400 -0.2223 2.6066 18 1 -0.3634 0.5137 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 2.5878 1.6944 0.7200 22 1 2.9334 4.9650 0.1338 23 1 1.4862 -0.5214 -2.1665 24 1 2.6412 -2.5338 -0.0566 25 1 2.4507 -2.8479 -1.8641 26 1 3.9875 -0.8924 -2.3657 27 1 4.1781 -0.5778 -0.5586 28 1 3.0648 -1.0887 1.1945 29 1 0.0065 -1.5864 1.6795 30 1 1.3947 -2.4678 2.5148 31 1 2.2356 -0.2621 3.4448 32 1 0.8481 0.6199 2.6095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691458551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:51 Heat of formation + Delta-G solvation = 45.093222 kcal Electronic energy + Delta-G solvation = -12846.006574 eV Core-core repulsion = 10807.924046 eV Total energy + Delta-G solvation = -2038.082528 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43415 -36.71600 -35.62770 -32.90426 -29.88071 -26.56623 -24.42741 -23.24841 -22.93799 -22.72975 -19.25916 -18.80968 -17.09631 -16.93298 -16.16274 -15.32463 -15.15880 -14.39431 -14.36270 -13.48605 -13.15882 -12.89944 -12.75939 -12.52804 -12.32327 -12.22002 -11.97147 -11.78266 -11.41254 -11.20554 -11.01953 -10.81908 -10.68255 -10.62698 -8.88799 -7.86228 -5.11816 1.46199 1.48231 1.53897 2.57939 3.01603 3.16375 3.46293 3.86926 3.95098 4.03915 4.20865 4.29555 4.33535 4.45023 4.53991 4.78833 4.87074 4.90869 4.93032 5.09796 5.11332 5.13080 5.31105 5.38505 5.40974 5.41504 5.51399 5.61676 5.72129 6.37245 7.42680 8.22611 8.46471 9.37549 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038999 B = 0.012263 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.794336 B = 2282.761222 C = 2580.643103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.248 3.752 3 N -0.721 5.721 4 C -0.212 4.212 5 H 0.069 0.931 6 C -0.080 4.080 7 N -0.972 5.972 8 Si 0.961 3.039 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.282 1.282 12 C -0.159 4.159 13 C -0.156 4.156 14 C -0.178 4.178 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.184 4.184 18 H 0.033 0.967 19 H 0.074 0.926 20 H 0.040 0.960 21 H 0.370 0.630 22 H 0.246 0.754 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -12.980 1.154 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.159 3.841 3 N -0.359 5.359 4 C -0.344 4.344 5 H 0.087 0.913 6 C -0.271 4.271 7 N -0.624 5.624 8 Si 0.791 3.209 9 H -0.207 1.207 10 H -0.225 1.225 11 H -0.209 1.209 12 C -0.179 4.179 13 C -0.193 4.193 14 C -0.215 4.215 15 C -0.176 4.176 16 C -0.190 4.190 17 C -0.221 4.221 18 H 0.053 0.947 19 H 0.092 0.908 20 H 0.059 0.941 21 H 0.202 0.798 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.459 -12.901 1.002 13.171 hybrid contribution 0.187 1.487 -0.585 1.609 sum -2.273 -11.413 0.417 11.645 Atomic orbital electron populations 1.22223 0.96979 1.00621 1.00379 1.18793 0.91906 0.83135 0.90287 1.42608 1.58996 1.07377 1.26956 1.19380 1.27315 0.89472 0.98231 0.91322 1.25411 1.02984 0.98604 1.00127 1.69810 1.46695 1.14052 1.31821 0.85389 0.77828 0.78255 0.79430 1.20749 1.22531 1.20879 1.22681 0.96275 0.99173 0.99777 1.23120 1.02509 0.90193 1.03496 1.22649 0.93380 1.03831 1.01653 1.22364 0.99172 1.04206 0.91848 1.23181 0.99344 0.94498 1.01993 1.22861 1.04188 0.98292 0.96798 0.94745 0.90777 0.94116 0.79825 0.94485 0.90372 0.87383 0.87916 0.89789 0.90623 0.88119 0.87867 0.86745 0.88374 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 7.09 71.98 0.51 -4.74 16 2 C 0.25 9.61 0.79 3.60 0.00 9.61 16 3 N -0.72 -36.07 5.06 -303.35 -1.53 -37.60 16 4 C -0.21 -11.73 8.72 84.03 0.73 -11.00 16 5 H 0.07 3.72 7.32 -2.91 -0.02 3.70 16 6 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 7 N -0.97 -60.49 13.07 21.65 0.28 -60.21 16 8 Si 0.96 47.30 29.55 68.60 2.03 49.33 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 10 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 C -0.16 -5.72 4.68 -10.79 -0.05 -5.77 16 13 C -0.16 -4.29 9.63 30.62 0.30 -4.00 16 14 C -0.18 -6.08 9.78 30.62 0.30 -5.78 16 15 C -0.16 -5.09 3.45 -10.79 -0.04 -5.13 16 16 C -0.15 -3.86 9.63 30.62 0.29 -3.57 16 17 C -0.18 -5.75 9.82 30.62 0.30 -5.45 16 18 H 0.03 1.37 7.35 -2.39 -0.02 1.35 16 19 H 0.07 2.19 6.74 -2.38 -0.02 2.18 16 20 H 0.04 1.54 6.96 -2.39 -0.02 1.53 16 21 H 0.37 20.28 7.68 -92.71 -0.71 19.57 16 22 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 23 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 24 H 0.11 2.68 6.21 -2.39 -0.01 2.67 16 25 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.08 2.79 7.47 -2.39 -0.02 2.77 16 28 H 0.10 3.20 6.18 -2.38 -0.01 3.18 16 29 H 0.10 2.52 5.89 -2.39 -0.01 2.51 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.07 2.66 7.28 -2.39 -0.02 2.65 16 Total: -1.00 -62.68 256.20 3.98 -58.69 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.39 Total: 29.79 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.81 Total: -40.00 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.25 Total: -97.81 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -62.68 3.98 -58.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691458551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.787 kcal (2) G-P(sol) polarization free energy of solvation -62.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds