Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46897 * 2 1 4 4 C 1.50696 * 109.47186 * 119.99787 * 2 1 3 5 5 H 1.08004 * 119.99730 * 120.00454 * 4 2 1 6 6 C 1.37873 * 120.00220 * 300.00356 * 4 2 1 7 7 N 1.31514 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99831 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47590 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47081 * 120.00376 * 8 6 4 11 11 H 1.48503 * 109.47074 * 240.00030 * 8 6 4 12 12 N 1.46902 * 109.47337 * 240.00537 * 2 1 3 13 13 C 1.46902 * 110.99990 * 84.99796 * 12 2 1 14 14 C 1.52998 * 109.46779 * 179.97438 * 13 12 2 15 15 H 1.08999 * 115.55051 * 330.72221 * 14 13 12 16 16 C 1.53005 * 117.49950 * 116.38900 * 14 13 12 17 17 C 1.52995 * 60.03007 * 107.47761 * 16 14 13 18 18 C 1.52999 * 138.58973 * 229.12087 * 17 16 14 19 19 C 1.52992 * 138.58961 * 130.90188 * 17 16 14 20 20 H 1.08996 * 109.47663 * 299.99473 * 1 2 3 21 21 H 1.09006 * 109.47091 * 59.99928 * 1 2 3 22 22 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 23 23 H 0.97005 * 119.99885 * 179.97438 * 7 6 4 24 24 H 1.00902 * 110.99876 * 208.94969 * 12 2 1 25 25 H 1.08994 * 109.47084 * 60.00330 * 13 12 2 26 26 H 1.08999 * 109.47180 * 299.99428 * 13 12 2 27 27 H 1.09002 * 117.50166 * 214.97910 * 16 14 13 28 28 H 1.09002 * 117.49677 * 359.97438 * 16 14 13 29 29 H 1.08994 * 117.49863 * 336.59580 * 18 17 16 30 30 H 1.08996 * 117.49928 * 121.61806 * 18 17 16 31 31 H 1.08994 * 117.50298 * 238.38849 * 19 17 16 32 32 H 1.09006 * 117.49909 * 23.41082 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1661 -1.5868 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2228 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 1 3.2688 -1.3649 -3.3664 16 6 1.6476 -0.6716 -4.7665 17 6 2.8452 0.2769 -4.8492 18 6 3.1372 1.7241 -5.2509 19 6 3.9991 0.5876 -5.8045 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7080 1.1607 3.4845 24 1 2.9174 -1.1203 -1.0288 25 1 2.7588 1.0463 -2.1182 26 1 1.0871 0.6164 -2.5526 27 1 1.6963 -1.5951 -5.3435 28 1 0.6573 -0.2252 -4.6764 29 1 2.4402 2.2067 -5.9359 30 1 3.5844 2.3746 -4.4993 31 1 5.0133 0.4904 -5.4172 32 1 3.8691 0.3225 -6.8538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697527303.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = 49.678756 kcal Electronic energy + Delta-G solvation = -11996.259569 eV Core-core repulsion = 9958.375884 eV Total energy + Delta-G solvation = -2037.883685 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.34189 -35.67413 -33.10150 -31.73362 -28.55549 -25.37081 -24.27231 -22.36890 -20.75554 -19.74183 -18.70928 -16.41206 -15.17115 -14.94984 -14.65827 -14.20322 -14.13963 -13.17400 -12.62453 -12.05311 -11.55641 -11.46376 -11.27932 -11.00278 -10.79609 -10.70499 -10.31594 -10.16899 -10.09830 -9.77183 -9.67432 -9.40109 -8.78470 -8.45821 -7.21347 -6.01129 -4.07466 3.29708 3.37378 3.41812 3.78931 3.87277 4.39576 4.45633 4.93417 5.04585 5.29942 5.48173 5.61861 5.70379 5.78034 5.84778 5.86223 5.94428 6.00915 6.15445 6.22911 6.35212 6.66350 6.91696 7.17254 7.26780 7.53985 7.80382 7.92715 8.29959 8.42633 8.70979 9.03937 9.58511 11.05354 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.065799 B = 0.006797 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.435852 B = 4118.483746 C = 4205.534326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.687 5.687 13 C 0.091 3.909 14 C -0.084 4.084 15 H 0.104 0.896 16 C -0.122 4.122 17 C -0.236 4.236 18 C -0.132 4.132 19 C -0.134 4.134 20 H 0.080 0.920 21 H 0.003 0.997 22 H 0.031 0.969 23 H 0.260 0.740 24 H 0.330 0.670 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -0.122 -12.269 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.318 5.318 13 C -0.039 4.039 14 C -0.102 4.102 15 H 0.122 0.878 16 C -0.159 4.159 17 C -0.237 4.237 18 C -0.169 4.169 19 C -0.171 4.171 20 H 0.099 0.901 21 H 0.022 0.978 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.599 -0.246 -12.281 12.555 hybrid contribution 1.023 0.148 1.063 1.483 sum 3.621 -0.098 -11.218 11.788 Atomic orbital electron populations 1.21709 0.97892 0.99336 0.99282 1.19114 0.92660 0.92320 0.85649 0.98245 1.21313 1.31314 1.12458 0.90464 0.92150 1.24932 0.95078 0.95015 0.99076 1.69915 1.36728 1.22995 1.23323 0.86461 0.78602 0.79603 0.82844 1.19749 1.21117 1.20955 1.60720 1.32006 1.33169 1.05926 1.21451 0.99224 0.93420 0.89792 1.22179 1.00667 0.99097 0.88302 0.87777 1.22762 0.93464 0.98538 1.01120 1.21612 1.01355 0.97942 1.02743 1.22568 1.02146 0.89788 1.02379 1.22598 0.94740 1.02175 0.97585 0.90147 0.97767 0.94943 0.93000 0.85344 0.96090 0.91646 0.89082 0.88721 0.88969 0.88765 0.88934 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.48 2.60 -68.87 -0.18 5.30 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.75 16 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.69 -15.20 6.30 -107.95 -0.68 -15.88 16 13 C 0.09 1.73 5.76 -3.82 -0.02 1.71 16 14 C -0.08 -1.33 5.95 -90.58 -0.54 -1.87 16 15 H 0.10 1.62 8.13 -51.93 -0.42 1.20 16 16 C -0.12 -1.70 10.17 -26.73 -0.27 -1.97 16 17 C -0.24 -3.27 5.40 -154.48 -0.83 -4.10 16 18 C -0.13 -1.61 10.53 -26.73 -0.28 -1.89 16 19 C -0.13 -1.54 10.53 -26.73 -0.28 -1.82 16 20 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.33 7.07 8.21 -39.29 -0.32 6.74 16 25 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 26 H 0.07 1.28 7.17 -51.93 -0.37 0.91 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 268.22 15.07 4.04 4.04 Total: -1.00 -28.85 268.22 -8.62 -37.47 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.13 Total: 3.74 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -2.46 Total: -20.61 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.05 Total: -41.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.85 -8.62 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697527303.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.153 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds