Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46897 * 2 1 4 4 C 1.50696 * 109.47186 * 119.99787 * 2 1 3 5 5 H 1.08004 * 119.99730 * 120.00454 * 4 2 1 6 6 C 1.37873 * 120.00220 * 300.00356 * 4 2 1 7 7 N 1.31514 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99831 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47590 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47081 * 120.00376 * 8 6 4 11 11 H 1.48503 * 109.47074 * 240.00030 * 8 6 4 12 12 N 1.46902 * 109.47337 * 240.00537 * 2 1 3 13 13 C 1.46902 * 110.99990 * 84.99796 * 12 2 1 14 14 C 1.52998 * 109.46779 * 179.97438 * 13 12 2 15 15 H 1.08999 * 115.55051 * 330.72221 * 14 13 12 16 16 C 1.53005 * 117.49950 * 116.38900 * 14 13 12 17 17 C 1.52995 * 60.03007 * 107.47761 * 16 14 13 18 18 C 1.52999 * 138.58973 * 229.12087 * 17 16 14 19 19 C 1.52992 * 138.58961 * 130.90188 * 17 16 14 20 20 H 1.08996 * 109.47663 * 299.99473 * 1 2 3 21 21 H 1.09006 * 109.47091 * 59.99928 * 1 2 3 22 22 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 23 23 H 0.97005 * 119.99885 * 179.97438 * 7 6 4 24 24 H 1.00902 * 110.99876 * 208.94969 * 12 2 1 25 25 H 1.08994 * 109.47084 * 60.00330 * 13 12 2 26 26 H 1.08999 * 109.47180 * 299.99428 * 13 12 2 27 27 H 1.09002 * 117.50166 * 214.97910 * 16 14 13 28 28 H 1.09002 * 117.49677 * 359.97438 * 16 14 13 29 29 H 1.08994 * 117.49863 * 336.59580 * 18 17 16 30 30 H 1.08996 * 117.49928 * 121.61806 * 18 17 16 31 31 H 1.08994 * 117.50298 * 238.38849 * 19 17 16 32 32 H 1.09006 * 117.49909 * 23.41082 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1661 -1.5868 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2228 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 1 3.2688 -1.3649 -3.3664 16 6 1.6476 -0.6716 -4.7665 17 6 2.8452 0.2769 -4.8492 18 6 3.1372 1.7241 -5.2509 19 6 3.9991 0.5876 -5.8045 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7080 1.1607 3.4845 24 1 2.9174 -1.1203 -1.0288 25 1 2.7588 1.0463 -2.1182 26 1 1.0871 0.6164 -2.5526 27 1 1.6963 -1.5951 -5.3435 28 1 0.6573 -0.2252 -4.6764 29 1 2.4402 2.2067 -5.9359 30 1 3.5844 2.3746 -4.4993 31 1 5.0133 0.4904 -5.4172 32 1 3.8691 0.3225 -6.8538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697527303.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = 32.646759 kcal Electronic energy + Delta-G solvation = -11996.998132 eV Core-core repulsion = 9958.375884 eV Total energy + Delta-G solvation = -2038.622247 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50441 -37.47512 -34.77782 -33.29152 -30.42928 -27.44430 -25.97837 -23.29018 -22.07627 -21.69247 -19.87082 -18.45743 -16.92255 -16.17507 -15.98957 -15.83533 -15.52106 -14.96650 -14.47891 -13.74492 -13.29651 -12.90396 -12.73598 -12.62664 -12.40001 -12.27129 -12.21145 -12.10546 -11.88209 -10.98059 -10.83077 -10.77417 -10.65304 -10.55659 -9.07434 -8.14887 -6.29690 1.41440 1.42844 1.55257 2.40662 2.73172 2.80578 3.13583 3.34289 3.74538 3.96152 4.03471 4.44528 4.54699 4.63114 4.73916 4.76149 4.82779 4.85468 4.90154 4.99671 5.01620 5.05543 5.19302 5.26884 5.32350 5.46382 5.65664 5.83781 6.19788 6.44985 6.75223 6.97985 7.41042 8.91378 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.065799 B = 0.006797 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.435852 B = 4118.483746 C = 4205.534326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.034 1.034 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.683 5.683 13 C 0.098 3.902 14 C -0.104 4.104 15 H 0.105 0.895 16 C -0.113 4.113 17 C -0.250 4.250 18 C -0.136 4.136 19 C -0.116 4.116 20 H 0.057 0.943 21 H 0.019 0.981 22 H 0.029 0.971 23 H 0.263 0.737 24 H 0.333 0.667 25 H 0.008 0.992 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -0.854 -13.248 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H -0.016 1.016 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.031 4.031 14 C -0.122 4.122 15 H 0.123 0.877 16 C -0.149 4.149 17 C -0.250 4.250 18 C -0.173 4.173 19 C -0.152 4.152 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.265 -0.982 -13.282 13.712 hybrid contribution 0.821 0.428 1.317 1.610 sum 4.086 -0.554 -11.965 12.656 Atomic orbital electron populations 1.21536 0.97662 0.98939 0.98949 1.18947 0.92866 0.90697 0.87054 1.01617 1.21620 1.31750 1.12739 0.91560 0.92123 1.25785 0.95119 0.95686 1.02203 1.70040 1.37478 1.24174 1.24203 0.85377 0.78136 0.78555 0.78757 1.18975 1.20559 1.20444 1.60646 1.32208 1.33300 1.05267 1.21384 0.98618 0.93015 0.90124 1.21955 1.02537 0.99952 0.87769 0.87657 1.22798 0.93195 0.99425 0.99530 1.21756 1.02536 0.99361 1.01396 1.22714 1.02689 0.89295 1.02559 1.22757 0.94159 1.00177 0.98119 0.92383 0.96150 0.95161 0.92769 0.84995 0.97388 0.92520 0.87222 0.88973 0.87460 0.89339 0.88328 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.19 71.98 0.66 -5.19 16 2 C 0.21 11.34 2.60 44.17 0.11 11.45 16 3 H -0.03 -1.99 7.80 -2.38 -0.02 -2.00 16 4 C -0.54 -30.36 8.59 25.60 0.22 -30.14 16 5 H 0.06 3.34 7.62 -2.91 -0.02 3.31 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.68 -30.51 6.30 -495.45 -3.12 -33.64 16 13 C 0.10 3.77 5.76 86.30 0.50 4.26 16 14 C -0.10 -3.19 5.95 -10.77 -0.06 -3.25 16 15 H 0.11 3.18 8.13 -2.39 -0.02 3.16 16 16 C -0.11 -2.93 10.17 30.59 0.31 -2.61 16 17 C -0.25 -6.44 5.40 -52.16 -0.28 -6.73 16 18 C -0.14 -3.04 10.53 30.60 0.32 -2.71 16 19 C -0.12 -2.30 10.53 30.59 0.32 -1.98 16 20 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 21 H 0.02 0.94 7.45 -2.38 -0.02 0.92 16 22 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 24 H 0.33 14.38 8.21 -89.69 -0.74 13.65 16 25 H 0.01 0.33 8.05 -2.39 -0.02 0.31 16 26 H 0.06 2.24 7.17 -2.39 -0.02 2.22 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.09 2.42 8.03 -2.39 -0.02 2.40 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -61.02 268.22 2.05 -58.97 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.35 Total: 18.26 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 2.55 Total: -35.83 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.88 Total: -87.37 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.02 2.05 -58.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697527303.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.620 kcal (2) G-P(sol) polarization free energy of solvation -61.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds