Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47269 * 2 1 4 4 C 1.50701 * 109.47382 * 239.99969 * 2 1 3 5 5 H 1.07999 * 119.99569 * 240.00736 * 4 2 1 6 6 C 1.37875 * 119.99957 * 59.99861 * 4 2 1 7 7 N 1.31506 * 120.00196 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99658 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47497 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47174 * 120.00112 * 8 6 4 11 11 H 1.48499 * 109.47006 * 239.99770 * 8 6 4 12 12 N 1.46907 * 109.47153 * 119.99812 * 2 1 3 13 13 C 1.46900 * 110.99760 * 275.00045 * 12 2 1 14 14 C 1.52998 * 109.46977 * 179.97438 * 13 12 2 15 15 H 1.08994 * 115.55108 * 330.72064 * 14 13 12 16 16 C 1.53005 * 117.50113 * 116.38807 * 14 13 12 17 17 C 1.52995 * 60.03007 * 107.50252 * 16 14 13 18 18 C 1.52999 * 138.58973 * 229.12087 * 17 16 14 19 19 C 1.52992 * 138.58961 * 130.90188 * 17 16 14 20 20 H 1.09007 * 109.47049 * 300.00755 * 1 2 3 21 21 H 1.09004 * 109.46784 * 59.99978 * 1 2 3 22 22 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00332 * 179.97438 * 7 6 4 24 24 H 1.00898 * 110.99620 * 38.94675 * 12 2 1 25 25 H 1.08997 * 109.47720 * 59.99746 * 13 12 2 26 26 H 1.09000 * 109.47065 * 299.99493 * 13 12 2 27 27 H 1.09002 * 117.50166 * 215.00401 * 16 14 13 28 28 H 1.09002 * 117.49677 * 0.02562 * 16 14 13 29 29 H 1.08994 * 117.49863 * 336.59580 * 18 17 16 30 30 H 1.08996 * 117.49928 * 121.61806 * 18 17 16 31 31 H 1.08994 * 117.50298 * 238.38849 * 19 17 16 32 32 H 1.09006 * 117.49909 * 23.41082 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 1 2.3634 -1.5977 3.6017 16 6 3.9296 -0.0849 4.1737 17 6 2.6219 0.2190 4.9075 18 6 1.9263 1.4118 5.5663 19 6 2.0372 0.0818 6.3146 20 1 -0.3633 0.5140 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.7096 1.1617 -3.4844 24 1 1.4494 -1.4978 1.4101 25 1 1.0871 0.6165 2.5525 26 1 2.7588 1.0462 2.1182 27 1 4.5760 -0.8548 4.5950 28 1 4.4422 0.7486 3.6935 29 1 2.5539 2.2350 5.9073 30 1 0.9448 1.6949 5.1861 31 1 1.1288 -0.5099 6.4267 32 1 2.7379 0.0302 7.1480 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697527308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = 33.714952 kcal Electronic energy + Delta-G solvation = -11997.276887 eV Core-core repulsion = 9958.700959 eV Total energy + Delta-G solvation = -2038.575927 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50965 -37.54529 -34.75599 -33.32240 -30.32594 -27.27885 -25.95777 -23.28923 -22.16001 -21.96934 -19.84592 -18.31645 -16.78510 -16.30403 -15.89968 -15.83951 -15.51489 -14.82247 -14.53656 -13.62901 -13.36677 -12.93001 -12.88339 -12.56205 -12.38963 -12.29521 -12.21143 -12.16262 -11.87608 -11.10651 -10.83632 -10.77639 -10.61199 -10.49822 -8.96691 -8.10152 -6.21808 1.42834 1.44154 1.57214 2.44179 2.73654 2.81165 3.18081 3.34949 3.75082 3.97372 4.04739 4.45911 4.53816 4.63015 4.72403 4.74658 4.76720 4.83125 4.87771 4.90438 5.00519 5.02745 5.08778 5.27415 5.32550 5.41873 5.68075 5.80586 6.25931 6.63443 6.82029 6.93855 7.48482 8.95941 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071586 B = 0.006839 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.045012 B = 4093.262518 C = 4292.391962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.685 5.685 13 C 0.098 3.902 14 C -0.102 4.102 15 H 0.107 0.893 16 C -0.117 4.117 17 C -0.249 4.249 18 C -0.136 4.136 19 C -0.115 4.115 20 H 0.022 0.978 21 H 0.062 0.938 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.332 0.668 25 H 0.015 0.985 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -1.317 13.975 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.315 5.315 13 C -0.031 4.031 14 C -0.120 4.120 15 H 0.125 0.875 16 C -0.154 4.154 17 C -0.249 4.249 18 C -0.172 4.172 19 C -0.152 4.152 20 H 0.041 0.959 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.447 -1.119 13.675 13.937 hybrid contribution -0.841 0.011 -0.905 1.235 sum 1.605 -1.107 12.771 12.919 Atomic orbital electron populations 1.22235 0.99947 0.99345 0.99985 1.18963 0.90117 0.92675 0.87769 0.98320 1.21487 1.30392 1.12471 0.91005 0.92624 1.25763 0.95437 0.95900 1.02041 1.70019 1.38155 1.24348 1.23994 0.85410 0.78074 0.78564 0.78971 1.19236 1.20464 1.20720 1.60668 1.57791 1.09562 1.03434 1.21358 0.97645 0.94756 0.89364 1.21957 1.01427 0.98520 0.90142 0.87531 1.22795 0.89467 1.02544 1.00566 1.21748 1.02889 1.05867 0.94429 1.22719 1.01026 0.91726 1.01763 1.22761 1.02025 0.98903 0.91472 0.95879 0.91874 0.94711 0.92963 0.85071 0.96653 0.93145 0.87314 0.89212 0.87612 0.89130 0.88165 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 8.94 71.98 0.64 -7.09 16 2 C 0.21 11.22 2.57 44.17 0.11 11.34 16 3 H 0.00 -0.07 7.80 -2.39 -0.02 -0.09 16 4 C -0.51 -29.39 8.84 25.60 0.23 -29.17 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.36 5.30 84.66 0.45 0.81 16 7 N -0.92 -54.34 11.32 21.45 0.24 -54.09 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 N -0.68 -30.22 6.23 -495.45 -3.09 -33.31 16 13 C 0.10 3.72 5.77 86.30 0.50 4.22 16 14 C -0.10 -3.11 5.95 -10.77 -0.06 -3.18 16 15 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 16 C -0.12 -3.10 10.17 30.59 0.31 -2.79 16 17 C -0.25 -6.36 5.40 -52.16 -0.28 -6.64 16 18 C -0.14 -2.98 10.53 30.60 0.32 -2.65 16 19 C -0.12 -2.24 10.53 30.59 0.32 -1.92 16 20 H 0.02 1.01 7.45 -2.38 -0.02 0.99 16 21 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 22 H 0.03 1.63 8.13 -2.39 -0.02 1.61 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.33 13.68 8.46 -89.70 -0.76 12.92 16 25 H 0.02 0.59 7.44 -2.39 -0.02 0.57 16 26 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.09 2.45 8.03 -2.39 -0.02 2.43 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -61.17 268.55 2.05 -59.12 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.33 Total: 18.71 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 2.54 Total: -37.07 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.85 Total: -87.40 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.17 2.05 -59.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697527308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.838 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds