Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09000 * 109.47381 * 55.78764 * 3 2 1 5 5 C 1.50702 * 109.47234 * 175.79320 * 3 2 1 6 6 H 1.07997 * 119.99730 * 119.99627 * 5 3 2 7 7 C 1.37874 * 119.99819 * 299.99550 * 5 3 2 8 8 N 1.31517 * 119.99493 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00251 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47269 * 89.99777 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.00115 * 9 7 5 12 12 H 1.48501 * 109.47053 * 330.00095 * 9 7 5 13 13 N 1.46908 * 109.46744 * 295.79319 * 3 2 1 14 14 C 1.46897 * 110.99873 * 153.03296 * 13 3 2 15 15 H 1.08999 * 110.34789 * 328.99256 * 14 13 3 16 16 C 1.51103 * 110.48403 * 91.34558 * 14 13 3 17 17 C 1.30527 * 111.10266 * 102.42038 * 16 14 13 18 18 C 1.51101 * 111.10673 * 0.02562 * 17 16 14 19 19 C 1.54631 * 110.38632 * 206.70484 * 14 13 3 20 20 H 1.08999 * 109.47378 * 295.70052 * 1 2 3 21 21 H 1.09009 * 109.46873 * 55.69996 * 1 2 3 22 22 H 1.09000 * 109.47223 * 175.69309 * 1 2 3 23 23 H 1.08994 * 109.47283 * 239.99345 * 2 1 3 24 24 H 1.09005 * 109.46619 * 119.99399 * 2 1 3 25 25 H 0.97001 * 119.99297 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99366 * 276.98368 * 13 3 2 27 27 H 1.08007 * 124.44704 * 282.40254 * 16 14 13 28 28 H 1.08007 * 124.44551 * 180.02562 * 17 16 14 29 29 H 1.09002 * 110.38491 * 257.62413 * 18 17 16 30 30 H 1.08996 * 110.38489 * 135.24671 * 18 17 16 31 31 H 1.09002 * 111.03947 * 147.67754 * 19 14 13 32 32 H 1.09002 * 111.06900 * 23.75444 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9777 0.8498 5 6 3.5434 1.4437 0.1042 6 1 4.1385 1.8918 -0.6777 7 6 4.1591 0.8728 1.1978 8 7 5.4711 0.8735 1.2885 9 14 3.1298 0.0972 2.5499 10 1 2.9049 -1.3375 2.2396 11 1 3.8440 0.2172 3.8464 12 1 1.8221 0.7952 2.6387 13 7 1.6350 2.1050 -1.2471 14 6 1.5133 3.5564 -1.0566 15 1 1.2067 3.7802 -0.0348 16 6 2.8207 4.2432 -1.3761 17 6 2.7794 4.8088 -2.5517 18 6 1.4374 4.5941 -3.2120 19 6 0.5014 4.1490 -2.0646 20 1 -0.3634 0.4457 0.9260 21 1 -0.3633 0.5792 -0.8490 22 1 -0.3634 -1.0248 -0.0772 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 5.9043 0.4715 2.0577 26 1 2.2774 1.8911 -1.9952 27 1 3.6769 4.2637 -0.7180 28 1 3.5972 5.3582 -2.9944 29 1 1.5073 3.8129 -3.9690 30 1 1.0797 5.5231 -3.6558 31 1 -0.0242 5.0022 -1.6357 32 1 -0.2023 3.3897 -2.4056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700564110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 13.859284 kcal Electronic energy + Delta-G solvation = -12691.995127 eV Core-core repulsion = 10652.558193 eV Total energy + Delta-G solvation = -2039.436933 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54392 -35.45307 -32.04434 -30.96025 -28.51170 -27.20882 -25.26224 -22.42239 -19.93318 -19.87816 -18.40164 -16.69487 -15.71252 -15.29118 -14.63371 -13.60665 -13.28119 -12.85026 -12.54840 -12.03206 -11.71570 -11.57172 -11.40488 -11.21451 -10.94052 -10.81091 -10.68321 -10.45071 -10.07036 -9.71212 -9.43282 -9.17335 -8.60727 -8.52290 -7.32365 -6.11198 -4.11549 2.80124 3.26617 3.37113 3.39437 4.38289 5.06125 5.13276 5.21815 5.39705 5.65746 5.84027 6.01993 6.03560 6.08299 6.10864 6.28059 6.29305 6.39863 6.53508 6.69317 6.72126 6.76095 7.01071 7.07557 7.13085 7.29156 7.41348 7.59355 8.07922 8.40794 8.52094 8.92571 9.52645 11.01569 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.012914 C = 0.010431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.235454 B = 2167.597786 C = 2683.666720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.181 3.819 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.666 5.666 14 C 0.112 3.888 15 H 0.073 0.927 16 C -0.158 4.158 17 C -0.191 4.191 18 C -0.095 4.095 19 C -0.118 4.118 20 H 0.037 0.963 21 H 0.064 0.936 22 H 0.032 0.968 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.263 0.737 26 H 0.337 0.663 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 4.249 -4.703 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.072 3.928 4 H 0.049 0.951 5 C -0.580 4.580 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.294 5.294 14 C 0.001 3.999 15 H 0.091 0.909 16 C -0.177 4.177 17 C -0.211 4.211 18 C -0.132 4.132 19 C -0.157 4.157 20 H 0.056 0.944 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.143 0.857 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.084 4.050 -4.481 10.909 hybrid contribution 0.857 -0.275 0.910 1.280 sum -8.227 3.775 -3.571 9.731 Atomic orbital electron populations 1.21742 0.97596 0.99464 1.01332 1.21819 0.93841 0.99413 1.00319 1.19671 0.94365 0.90579 0.88184 0.95081 1.21786 0.90367 1.38482 1.07366 0.90685 1.25014 0.94734 0.95384 0.97958 1.69921 1.08406 1.45119 1.30256 0.86826 0.80474 0.79900 0.80845 1.20540 1.22702 1.19010 1.60943 1.53994 1.05463 1.08958 1.21284 0.91229 0.88864 0.98480 0.90930 1.24122 1.00128 0.95921 0.97566 1.23153 0.98139 1.02463 0.97307 1.21301 0.93467 1.00225 0.98201 1.22495 0.97372 0.99747 0.96043 0.94357 0.91711 0.94866 0.92463 0.93816 0.92717 0.84619 0.85696 0.86878 0.91329 0.92292 0.91910 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.85 37.16 0.37 -2.30 16 2 C -0.12 -2.54 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.20 1.58 -68.86 -0.11 4.09 16 4 H 0.03 0.76 6.44 -51.93 -0.33 0.43 16 5 C -0.54 -14.74 8.60 -34.44 -0.30 -15.04 16 6 H 0.08 2.21 7.55 -52.49 -0.40 1.82 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.89 22.06 24.40 -169.99 -4.15 17.91 16 10 H -0.28 -6.78 6.84 56.52 0.39 -6.39 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.67 -13.35 5.43 -101.05 -0.55 -13.90 16 14 C 0.11 2.05 3.22 -67.81 -0.22 1.83 16 15 H 0.07 1.40 7.39 -51.93 -0.38 1.01 16 16 C -0.16 -2.92 9.15 -35.70 -0.33 -3.25 16 17 C -0.19 -3.05 10.77 -35.70 -0.38 -3.43 16 18 C -0.09 -1.34 6.81 -26.83 -0.18 -1.52 16 19 C -0.12 -1.76 6.90 -25.02 -0.17 -1.93 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 1.15 7.61 -51.92 -0.40 0.75 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.34 6.99 8.06 -39.29 -0.32 6.67 16 27 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 28 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 253.32 15.07 3.82 3.82 Total: -1.00 -28.44 253.32 -6.64 -35.08 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.98 Total: 5.88 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.56 Total: -22.28 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.22 Total: -40.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.44 -6.64 -35.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700564110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.937 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds