Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 H 1.09003 * 109.46815 * 57.30825 * 3 2 1 5 5 C 1.50695 * 109.47176 * 177.31067 * 3 2 1 6 6 H 1.07997 * 120.00022 * 114.62257 * 5 3 2 7 7 C 1.37884 * 119.99850 * 294.61795 * 5 3 2 8 8 N 1.31514 * 120.00004 * 351.81960 * 7 5 3 9 9 Si 1.86797 * 119.99614 * 171.81356 * 7 5 3 10 10 H 1.48495 * 109.47404 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47349 * 239.99987 * 9 7 5 12 12 H 1.48502 * 109.47092 * 120.00345 * 9 7 5 13 13 N 1.46897 * 109.46841 * 297.31159 * 3 2 1 14 14 C 1.46904 * 110.99990 * 154.33028 * 13 3 2 15 15 H 1.08999 * 110.34278 * 33.87291 * 14 13 3 16 16 C 1.51097 * 110.38584 * 271.46132 * 14 13 3 17 17 C 1.30526 * 111.10848 * 257.62564 * 16 14 13 18 18 C 1.51096 * 111.10140 * 0.02562 * 17 16 14 19 19 C 1.54629 * 104.72756 * 343.56512 * 18 17 16 20 20 H 1.09000 * 109.46732 * 65.26604 * 1 2 3 21 21 H 1.09005 * 109.46702 * 185.26497 * 1 2 3 22 22 H 1.08993 * 109.47087 * 305.26131 * 1 2 3 23 23 H 1.09001 * 109.47221 * 239.99752 * 2 1 3 24 24 H 1.09004 * 109.47203 * 119.99655 * 2 1 3 25 25 H 0.96993 * 119.99899 * 354.60367 * 8 7 5 26 26 H 1.00904 * 110.99842 * 278.28410 * 13 3 2 27 27 H 1.08010 * 124.44826 * 77.60420 * 16 14 13 28 28 H 1.08000 * 124.45036 * 179.97438 * 17 16 14 29 29 H 1.09004 * 110.38684 * 224.75145 * 18 17 16 30 30 H 1.08998 * 110.38988 * 102.37635 * 18 17 16 31 31 H 1.09004 * 111.03570 * 266.60053 * 19 18 17 32 32 H 1.08998 * 111.04112 * 142.66682 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6379 1.9700 0.8649 5 6 3.5456 1.4430 0.0667 6 1 4.1228 1.8195 -0.7648 7 6 4.1861 0.9628 1.1893 8 7 3.4905 0.6551 2.2622 9 14 6.0418 0.7492 1.1862 10 1 6.5856 1.1638 -0.1319 11 1 6.3765 -0.6761 1.4342 12 1 6.6387 1.5908 2.2543 13 7 1.6042 2.1159 -1.2306 14 6 1.5170 3.5690 -1.0330 15 1 2.2881 3.9040 -0.3393 16 6 0.1462 3.9497 -0.5240 17 6 -0.5886 4.4485 -1.4805 18 6 0.1695 4.4831 -2.7871 19 6 1.6522 4.3047 -2.3861 20 1 -0.3633 0.4300 -0.9334 21 1 -0.3633 -1.0234 0.0943 22 1 -0.3633 0.5932 0.8391 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5386 0.8388 2.2922 26 1 2.2156 1.8918 -2.0014 27 1 -0.1827 3.8250 0.4972 28 1 -1.6052 4.7907 -1.3548 29 1 0.0236 5.4415 -3.2855 30 1 -0.1500 3.6656 -3.4333 31 1 2.1420 5.2702 -2.2589 32 1 2.1834 3.6914 -3.1140 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700564111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 2.012862 kcal Electronic energy + Delta-G solvation = -12638.250265 eV Core-core repulsion = 10598.299632 eV Total energy + Delta-G solvation = -2039.950633 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.47560 -35.51178 -31.94564 -30.82318 -28.55119 -26.69190 -24.69839 -22.79868 -20.23506 -19.72058 -18.11137 -16.92600 -15.64094 -15.18158 -13.89235 -13.78268 -13.51414 -13.01029 -12.36911 -11.85371 -11.76566 -11.45130 -11.24089 -11.04401 -10.84976 -10.73278 -10.57183 -10.29084 -10.16251 -9.71448 -9.61712 -8.89820 -8.55394 -8.31116 -7.23081 -6.32677 -4.10254 2.74375 3.41904 3.44437 3.57811 4.51340 5.04301 5.10100 5.29946 5.35744 5.67971 5.70602 5.96507 6.05628 6.22416 6.26106 6.29336 6.37226 6.45884 6.51160 6.58826 6.87665 6.95594 6.97087 7.21831 7.37764 7.39923 7.58733 7.99369 8.09879 8.48478 8.64547 8.82931 9.62584 10.99384 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.011236 C = 0.009636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.189126 B = 2491.440045 C = 2905.212369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.024 0.976 5 C -0.626 4.626 6 H 0.048 0.952 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.065 2.935 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.289 1.289 13 N -0.671 5.671 14 C 0.108 3.892 15 H 0.052 0.948 16 C -0.126 4.126 17 C -0.182 4.182 18 C -0.088 4.088 19 C -0.126 4.126 20 H 0.053 0.947 21 H 0.027 0.973 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.272 0.728 26 H 0.330 0.670 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 5.059 -6.834 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.042 0.958 5 C -0.665 4.665 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.894 3.106 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.216 1.216 13 N -0.301 5.301 14 C -0.002 4.002 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.202 4.202 18 C -0.125 4.125 19 C -0.164 4.164 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.130 4.390 -5.806 8.369 hybrid contribution -0.340 0.729 -0.742 1.094 sum -4.470 5.119 -6.548 9.437 Atomic orbital electron populations 1.21680 0.98253 0.98503 1.00957 1.21529 0.92865 0.99460 1.00725 1.19284 0.93321 0.90442 0.87591 0.95798 1.22680 0.92291 1.46997 1.04502 0.93400 1.25694 1.06426 0.93486 0.92279 1.70713 1.10343 1.44365 1.28922 0.83619 0.74945 0.76878 0.75154 1.21680 1.21212 1.21558 1.60822 1.55745 1.04992 1.08571 1.21155 0.94169 0.90049 0.94826 0.93036 1.23260 0.96591 0.96343 0.98293 1.23066 0.98829 1.03038 0.95219 1.21215 0.94429 1.00621 0.96212 1.22604 0.96289 1.00099 0.97416 0.92794 0.95395 0.94448 0.93990 0.92069 0.91619 0.85284 0.86971 0.86802 0.92396 0.91084 0.91595 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.71 37.16 0.36 -2.42 16 2 C -0.11 -2.53 5.35 -26.73 -0.14 -2.68 16 3 C 0.20 4.99 1.47 -68.87 -0.10 4.89 16 4 H 0.02 0.65 7.06 -51.93 -0.37 0.29 16 5 C -0.63 -17.12 8.28 -34.44 -0.29 -17.40 16 6 H 0.05 1.32 7.71 -52.49 -0.40 0.92 16 7 C 0.03 0.75 5.20 -17.82 -0.09 0.66 16 8 N -0.91 -26.89 12.83 55.43 0.71 -26.18 16 9 Si 1.07 25.13 29.91 -169.99 -5.08 20.05 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.67 -14.22 5.53 -101.07 -0.56 -14.78 16 14 C 0.11 2.09 3.00 -67.82 -0.20 1.89 16 15 H 0.05 1.14 7.72 -51.93 -0.40 0.74 16 16 C -0.13 -2.24 10.29 -35.70 -0.37 -2.61 16 17 C -0.18 -2.79 10.77 -35.70 -0.38 -3.17 16 18 C -0.09 -1.25 6.81 -26.83 -0.18 -1.43 16 19 C -0.13 -1.99 6.85 -25.02 -0.17 -2.16 16 20 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.59 6.45 -51.93 -0.33 1.26 16 25 H 0.27 8.07 6.30 -40.82 -0.26 7.81 16 26 H 0.33 6.95 7.71 -39.29 -0.30 6.64 16 27 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 LS Contribution 260.63 15.07 3.93 3.93 Total: -1.00 -28.51 260.63 -7.62 -36.13 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.04 Total: 5.30 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -1.57 Total: -24.44 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.15 Total: -40.96 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.51 -7.62 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700564111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.140 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds