Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 H 1.09003 * 109.46815 * 57.30825 * 3 2 1 5 5 C 1.50695 * 109.47176 * 177.31067 * 3 2 1 6 6 H 1.07997 * 120.00022 * 114.62257 * 5 3 2 7 7 C 1.37884 * 119.99850 * 294.61795 * 5 3 2 8 8 N 1.31514 * 120.00004 * 351.81960 * 7 5 3 9 9 Si 1.86797 * 119.99614 * 171.81356 * 7 5 3 10 10 H 1.48495 * 109.47404 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47349 * 239.99987 * 9 7 5 12 12 H 1.48502 * 109.47092 * 120.00345 * 9 7 5 13 13 N 1.46897 * 109.46841 * 297.31159 * 3 2 1 14 14 C 1.46904 * 110.99990 * 154.33028 * 13 3 2 15 15 H 1.08999 * 110.34278 * 33.87291 * 14 13 3 16 16 C 1.51097 * 110.38584 * 271.46132 * 14 13 3 17 17 C 1.30526 * 111.10848 * 257.62564 * 16 14 13 18 18 C 1.51096 * 111.10140 * 0.02562 * 17 16 14 19 19 C 1.54629 * 104.72756 * 343.56512 * 18 17 16 20 20 H 1.09000 * 109.46732 * 65.26604 * 1 2 3 21 21 H 1.09005 * 109.46702 * 185.26497 * 1 2 3 22 22 H 1.08993 * 109.47087 * 305.26131 * 1 2 3 23 23 H 1.09001 * 109.47221 * 239.99752 * 2 1 3 24 24 H 1.09004 * 109.47203 * 119.99655 * 2 1 3 25 25 H 0.96993 * 119.99899 * 354.60367 * 8 7 5 26 26 H 1.00904 * 110.99842 * 278.28410 * 13 3 2 27 27 H 1.08010 * 124.44826 * 77.60420 * 16 14 13 28 28 H 1.08000 * 124.45036 * 179.97438 * 17 16 14 29 29 H 1.09004 * 110.38684 * 224.75145 * 18 17 16 30 30 H 1.08998 * 110.38988 * 102.37635 * 18 17 16 31 31 H 1.09004 * 111.03570 * 266.60053 * 19 18 17 32 32 H 1.08998 * 111.04112 * 142.66682 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6379 1.9700 0.8649 5 6 3.5456 1.4430 0.0667 6 1 4.1228 1.8195 -0.7648 7 6 4.1861 0.9628 1.1893 8 7 3.4905 0.6551 2.2622 9 14 6.0418 0.7492 1.1862 10 1 6.5856 1.1638 -0.1319 11 1 6.3765 -0.6761 1.4342 12 1 6.6387 1.5908 2.2543 13 7 1.6042 2.1159 -1.2306 14 6 1.5170 3.5690 -1.0330 15 1 2.2881 3.9040 -0.3393 16 6 0.1462 3.9497 -0.5240 17 6 -0.5886 4.4485 -1.4805 18 6 0.1695 4.4831 -2.7871 19 6 1.6522 4.3047 -2.3861 20 1 -0.3633 0.4300 -0.9334 21 1 -0.3633 -1.0234 0.0943 22 1 -0.3633 0.5932 0.8391 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5386 0.8388 2.2922 26 1 2.2156 1.8918 -2.0014 27 1 -0.1827 3.8250 0.4972 28 1 -1.6052 4.7907 -1.3548 29 1 0.0236 5.4415 -3.2855 30 1 -0.1500 3.6656 -3.4333 31 1 2.1420 5.2702 -2.2589 32 1 2.1834 3.6914 -3.1140 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700564111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -15.173588 kcal Electronic energy + Delta-G solvation = -12638.995526 eV Core-core repulsion = 10598.299632 eV Total energy + Delta-G solvation = -2040.695893 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.93205 -37.35002 -33.95781 -32.54723 -29.83780 -28.40981 -26.48737 -24.72442 -21.83678 -21.40174 -19.58966 -18.89335 -16.99249 -16.83706 -15.76602 -15.43999 -15.26546 -14.81358 -14.15786 -13.67349 -13.28767 -12.99840 -12.69807 -12.57040 -12.40692 -12.31658 -12.21471 -12.00526 -11.92665 -11.61058 -11.33952 -10.88229 -10.48692 -9.89048 -9.10569 -8.52028 -6.35469 1.42629 1.49040 1.56977 1.72803 2.53747 3.15303 3.61973 3.77999 3.91681 4.32403 4.38930 4.45558 4.51954 4.66863 4.73057 4.81072 4.92412 4.98131 5.04576 5.16639 5.19212 5.28148 5.37352 5.47527 5.62670 5.67235 5.95111 6.00506 6.08711 6.51684 6.55886 6.82763 7.45914 8.73878 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.011236 C = 0.009636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.189126 B = 2491.440045 C = 2905.212369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C 0.209 3.791 4 H -0.009 1.009 5 C -0.633 4.633 6 H 0.042 0.958 7 C -0.024 4.024 8 N -0.930 5.930 9 Si 1.111 2.889 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.102 3.898 15 H 0.009 0.991 16 C -0.170 4.170 17 C -0.147 4.147 18 C -0.085 4.085 19 C -0.121 4.121 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.030 0.970 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.099 0.901 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 5.679 -8.734 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.100 3.900 4 H 0.009 0.991 5 C -0.672 4.672 6 H 0.061 0.939 7 C -0.223 4.223 8 N -0.567 5.567 9 Si 0.934 3.066 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.289 5.289 14 C -0.008 4.008 15 H 0.027 0.973 16 C -0.189 4.189 17 C -0.166 4.166 18 C -0.122 4.122 19 C -0.159 4.159 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.117 0.883 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.713 5.022 -7.724 10.349 hybrid contribution -0.217 0.602 -0.191 0.668 sum -4.930 5.624 -7.915 10.890 Atomic orbital electron populations 1.21532 0.95453 0.99927 1.01110 1.21391 0.95329 0.98137 0.99167 1.19068 0.91880 0.91094 0.87988 0.99144 1.23009 0.93889 1.46234 1.04108 0.93944 1.27061 1.10289 0.93028 0.91964 1.70830 1.09785 1.46198 1.29910 0.83011 0.70264 0.77272 0.76033 1.19935 1.20406 1.20992 1.60817 1.54886 1.06377 1.06850 1.21256 0.94166 0.88949 0.96383 0.97320 1.23098 0.96659 1.00331 0.98764 1.23450 0.99475 0.98992 0.94685 1.21277 0.92507 1.02684 0.95732 1.22602 0.98161 1.00129 0.95010 0.91917 0.93135 0.95065 0.93995 0.95001 0.93018 0.85290 0.88320 0.83888 0.89140 0.90263 0.90418 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.71 71.98 0.70 -4.23 16 2 C -0.10 -4.88 5.35 30.60 0.16 -4.72 16 3 C 0.21 10.65 1.47 44.17 0.07 10.72 16 4 H -0.01 -0.54 7.06 -2.39 -0.02 -0.55 16 5 C -0.63 -35.50 8.28 25.60 0.21 -35.29 16 6 H 0.04 2.37 7.71 -2.91 -0.02 2.35 16 7 C -0.02 -1.36 5.20 84.66 0.44 -0.92 16 8 N -0.93 -56.79 12.83 21.45 0.28 -56.52 16 9 Si 1.11 50.84 29.91 68.60 2.05 52.89 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.66 -28.13 5.53 -473.67 -2.62 -30.75 16 14 C 0.10 4.00 3.00 44.84 0.13 4.13 16 15 H 0.01 0.41 7.72 -2.39 -0.02 0.39 16 16 C -0.17 -5.99 10.29 26.26 0.27 -5.72 16 17 C -0.15 -4.06 10.77 26.26 0.28 -3.78 16 18 C -0.09 -2.09 6.81 30.53 0.21 -1.89 16 19 C -0.12 -3.58 6.85 31.70 0.22 -3.37 16 20 H 0.06 2.39 7.84 -2.39 -0.02 2.38 16 21 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.03 1.70 6.45 -2.38 -0.02 1.68 16 25 H 0.26 16.12 6.30 -92.71 -0.58 15.53 16 26 H 0.33 13.82 7.71 -89.69 -0.69 13.12 16 27 H 0.10 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.08 2.16 7.56 -2.39 -0.02 2.14 16 Total: -1.00 -62.57 260.63 2.97 -59.60 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.57 Total: 19.83 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 2.69 Total: -45.05 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.35 Total: -87.27 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -62.57 2.97 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700564111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.427 kcal (2) G-P(sol) polarization free energy of solvation -62.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds