Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.53004 * 109.47243 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46956 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00557 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99720 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00370 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00048 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47269 * 90.00522 * 10 8 6 12 12 H 1.48505 * 109.47539 * 210.00048 * 10 8 6 13 13 H 1.48496 * 109.47540 * 330.00399 * 10 8 6 14 14 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 15 15 C 1.51104 * 104.82203 * 266.65909 * 14 2 1 16 16 C 1.30525 * 111.10650 * 343.50481 * 15 14 2 17 17 C 1.51094 * 111.10287 * 0.02562 * 16 15 14 18 18 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 19 19 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 20 20 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 21 21 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 22 22 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 23 23 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 24 24 H 1.08993 * 109.46810 * 299.99682 * 5 4 3 25 25 H 1.09002 * 109.46645 * 59.99625 * 5 4 3 26 26 H 0.96993 * 120.00131 * 179.97438 * 9 8 6 27 27 H 1.09002 * 110.38719 * 147.78988 * 14 2 1 28 28 H 1.09000 * 110.38599 * 25.52408 * 14 2 1 29 29 H 1.08001 * 124.43953 * 163.48841 * 15 14 2 30 30 H 1.07999 * 124.44678 * 179.97438 * 16 15 14 31 31 H 1.08999 * 110.38926 * 135.24917 * 17 16 15 32 32 H 1.09008 * 110.38956 * 257.50891 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0958 3.5577 1.1037 6 6 1.5539 4.3433 2.2699 7 1 0.8719 3.8767 2.9652 8 6 1.9280 5.6583 2.4487 9 7 1.4547 6.3441 3.4662 10 14 3.1071 6.4657 1.2458 11 1 2.3360 7.0946 0.1434 12 1 3.8994 7.5050 1.9511 13 1 4.0233 5.4397 0.6863 14 6 2.0850 -0.8068 -1.1967 15 6 2.3033 -2.2006 -0.6554 16 6 2.3044 -2.2030 0.6499 17 6 2.0865 -0.8114 1.1966 18 1 -0.3634 -1.0251 0.0714 19 1 -0.3633 0.5745 0.8521 20 1 -0.3633 0.4507 -0.9235 21 1 1.8539 1.8361 -0.8730 22 1 0.4399 2.1796 1.0735 23 1 1.8182 1.6520 2.0686 24 1 3.1831 3.5153 1.1675 25 1 1.8051 4.0435 0.1722 26 1 1.7182 7.2691 3.5921 27 1 3.0282 -0.3799 -1.5378 28 1 1.3608 -0.8249 -2.0111 29 1 2.4400 -3.0793 -1.2681 30 1 2.4421 -3.0841 1.2590 31 1 1.3621 -0.8324 2.0109 32 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702174532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = 7.540273 kcal Electronic energy + Delta-G solvation = -12239.734637 eV Core-core repulsion = 10200.023691 eV Total energy + Delta-G solvation = -2039.710946 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30357 -35.06678 -32.75332 -30.57971 -28.17289 -28.13068 -25.68813 -23.70901 -20.48717 -19.08227 -18.45837 -16.72894 -15.96076 -15.12027 -14.44531 -14.11989 -13.74099 -13.21235 -12.62700 -12.49281 -12.07040 -12.04275 -11.76399 -11.37493 -11.32117 -11.08937 -10.93519 -10.33658 -10.03347 -9.84339 -9.66805 -9.19979 -8.81752 -8.51778 -7.89263 -6.02605 -4.00752 2.33107 3.33452 3.40956 3.47298 4.48127 4.57975 4.65484 4.86534 5.17227 5.30514 5.32066 5.54845 5.72964 5.78530 5.91341 6.00495 6.07424 6.10548 6.15668 6.23322 6.33613 6.51774 6.57864 6.82878 6.96835 7.20435 7.41136 7.67339 7.80413 7.94994 8.55472 9.01663 9.60010 11.10789 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.064905 B = 0.007506 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.297467 B = 3729.617069 C = 3859.924120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.680 5.680 4 C 0.070 3.930 5 C -0.010 4.010 6 C -0.520 4.520 7 H 0.070 0.930 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.263 1.263 14 C -0.091 4.091 15 C -0.171 4.171 16 C -0.161 4.161 17 C -0.089 4.089 18 H 0.056 0.944 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.335 0.665 22 H 0.026 0.974 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.008 0.992 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -14.414 -8.485 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 N -0.309 5.309 4 C -0.058 4.058 5 C -0.048 4.048 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.188 1.188 14 C -0.128 4.128 15 C -0.189 4.189 16 C -0.180 4.180 17 C -0.126 4.126 18 H 0.075 0.925 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.153 0.847 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.246 -14.386 -8.066 16.540 hybrid contribution -0.381 0.649 -0.790 1.092 sum 0.865 -13.737 -8.856 16.367 Atomic orbital electron populations 1.22402 0.96613 1.01921 1.02246 1.21751 0.91902 0.89985 0.95021 1.60819 1.61878 1.01352 1.06882 1.22002 0.96412 0.95105 0.92233 1.19555 0.97079 0.91296 0.96892 1.21076 1.28312 0.96306 1.10173 0.91150 1.25009 0.95938 0.97214 0.95292 1.69915 1.44877 1.09892 1.29684 0.86749 0.81761 0.79276 0.81353 1.20428 1.21448 1.18760 1.21432 1.01378 0.92696 0.97313 1.23163 1.01954 0.97548 0.96247 1.23279 1.00564 0.97869 0.96261 1.21456 1.01842 0.91933 0.97399 0.92475 0.91581 0.92822 0.84722 0.95538 0.91703 0.95736 0.97373 0.92755 0.89788 0.91738 0.86304 0.86232 0.91508 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.25 37.16 0.31 -2.06 16 2 C 0.11 1.51 0.88 -129.73 -0.11 1.40 16 3 N -0.68 -11.60 6.13 -98.07 -0.60 -12.20 16 4 C 0.07 1.44 4.99 -3.82 -0.02 1.42 16 5 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 6 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 10 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 14 C -0.09 -1.13 6.06 -26.82 -0.16 -1.29 16 15 C -0.17 -1.95 10.78 -35.70 -0.38 -2.34 16 16 C -0.16 -1.93 10.78 -35.70 -0.38 -2.32 16 17 C -0.09 -1.26 5.14 -26.68 -0.14 -1.40 16 18 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 19 H 0.07 0.99 6.27 -51.93 -0.33 0.67 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.34 5.42 8.77 -39.29 -0.34 5.07 16 22 H 0.03 0.54 6.27 -51.93 -0.33 0.22 16 23 H 0.06 1.36 7.45 -51.93 -0.39 0.97 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 28 H 0.06 0.73 7.91 -51.93 -0.41 0.31 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.09 1.37 8.08 -51.92 -0.42 0.95 16 LS Contribution 258.82 15.07 3.90 3.90 Total: -1.00 -30.38 258.82 -7.13 -37.51 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.09 Total: 1.29 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.45 Total: -20.48 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.17 Total: -39.66 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.38 -7.13 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702174532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.046 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds