Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.53004 * 109.47243 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46956 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00557 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99720 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00370 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00048 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47269 * 90.00522 * 10 8 6 12 12 H 1.48505 * 109.47539 * 210.00048 * 10 8 6 13 13 H 1.48496 * 109.47540 * 330.00399 * 10 8 6 14 14 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 15 15 C 1.51104 * 104.82203 * 266.65909 * 14 2 1 16 16 C 1.30525 * 111.10650 * 343.50481 * 15 14 2 17 17 C 1.51094 * 111.10287 * 0.02562 * 16 15 14 18 18 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 19 19 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 20 20 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 21 21 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 22 22 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 23 23 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 24 24 H 1.08993 * 109.46810 * 299.99682 * 5 4 3 25 25 H 1.09002 * 109.46645 * 59.99625 * 5 4 3 26 26 H 0.96993 * 120.00131 * 179.97438 * 9 8 6 27 27 H 1.09002 * 110.38719 * 147.78988 * 14 2 1 28 28 H 1.09000 * 110.38599 * 25.52408 * 14 2 1 29 29 H 1.08001 * 124.43953 * 163.48841 * 15 14 2 30 30 H 1.07999 * 124.44678 * 179.97438 * 16 15 14 31 31 H 1.08999 * 110.38926 * 135.24917 * 17 16 15 32 32 H 1.09008 * 110.38956 * 257.50891 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0958 3.5577 1.1037 6 6 1.5539 4.3433 2.2699 7 1 0.8719 3.8767 2.9652 8 6 1.9280 5.6583 2.4487 9 7 1.4547 6.3441 3.4662 10 14 3.1071 6.4657 1.2458 11 1 2.3360 7.0946 0.1434 12 1 3.8994 7.5050 1.9511 13 1 4.0233 5.4397 0.6863 14 6 2.0850 -0.8068 -1.1967 15 6 2.3033 -2.2006 -0.6554 16 6 2.3044 -2.2030 0.6499 17 6 2.0865 -0.8114 1.1966 18 1 -0.3634 -1.0251 0.0714 19 1 -0.3633 0.5745 0.8521 20 1 -0.3633 0.4507 -0.9235 21 1 1.8539 1.8361 -0.8730 22 1 0.4399 2.1796 1.0735 23 1 1.8182 1.6520 2.0686 24 1 3.1831 3.5153 1.1675 25 1 1.8051 4.0435 0.1722 26 1 1.7182 7.2691 3.5921 27 1 3.0282 -0.3799 -1.5378 28 1 1.3608 -0.8249 -2.0111 29 1 2.4400 -3.0793 -1.2681 30 1 2.4421 -3.0841 1.2590 31 1 1.3621 -0.8324 2.0109 32 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702174532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = -12.404092 kcal Electronic energy + Delta-G solvation = -12240.599490 eV Core-core repulsion = 10200.023691 eV Total energy + Delta-G solvation = -2040.575799 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42010 -36.58903 -34.76195 -32.26219 -29.66272 -29.17752 -26.93626 -25.44922 -22.33871 -20.22957 -19.54689 -18.85698 -17.13760 -16.29034 -16.21475 -15.86928 -15.26907 -14.59782 -14.31295 -14.05271 -13.46444 -13.23416 -12.99541 -12.91148 -12.75391 -12.47687 -12.04483 -11.88588 -11.75185 -11.63760 -11.47571 -11.27696 -10.77463 -9.76852 -9.29835 -8.30645 -6.35304 1.35899 1.38700 1.43137 1.51914 2.36402 3.04883 3.26999 3.60139 3.85468 4.08358 4.37612 4.41951 4.47531 4.57694 4.70518 4.81143 4.85365 4.93147 4.94979 5.06958 5.09820 5.13558 5.28502 5.37929 5.49744 5.63534 5.65272 6.07515 6.20617 6.27063 6.57571 6.73842 7.29676 8.86144 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.064905 B = 0.007506 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.297467 B = 3729.617069 C = 3859.924120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.680 5.680 4 C 0.087 3.913 5 C -0.004 4.004 6 C -0.534 4.534 7 H 0.030 0.970 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.248 1.248 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.171 4.171 17 C -0.094 4.094 18 H 0.072 0.928 19 H 0.044 0.956 20 H 0.062 0.938 21 H 0.343 0.657 22 H 0.022 0.978 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.267 0.733 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -15.568 -10.828 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 N -0.310 5.310 4 C -0.042 4.042 5 C -0.042 4.042 6 C -0.573 4.573 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.592 5.592 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.172 1.172 14 C -0.126 4.126 15 C -0.179 4.179 16 C -0.189 4.189 17 C -0.132 4.132 18 H 0.090 0.910 19 H 0.063 0.937 20 H 0.081 0.919 21 H 0.161 0.839 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.082 -15.564 -10.421 18.846 hybrid contribution -0.704 0.967 0.001 1.196 sum 1.378 -14.597 -10.420 17.988 Atomic orbital electron populations 1.22338 0.95961 1.02603 1.01764 1.21913 0.92464 0.88518 0.96493 1.60714 1.61961 1.02342 1.05991 1.21624 0.95895 0.93402 0.93278 1.19442 0.96588 0.93010 0.95181 1.21408 1.27768 0.97048 1.11036 0.95138 1.26014 0.97934 0.97909 0.97336 1.70066 1.46674 1.10528 1.31902 0.85590 0.79393 0.78368 0.78864 1.18978 1.20914 1.17203 1.21417 1.01541 0.92896 0.96704 1.23381 1.00564 0.97758 0.96157 1.23324 1.01705 0.97071 0.96835 1.21462 1.00611 0.93708 0.97397 0.90951 0.93676 0.91904 0.83878 0.95993 0.93039 0.96084 0.96303 0.92420 0.90099 0.90000 0.83485 0.84291 0.92275 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 8.25 71.98 0.59 -3.76 16 2 C 0.10 2.66 0.88 4.74 0.00 2.66 16 3 N -0.68 -22.45 6.13 -464.20 -2.84 -25.30 16 4 C 0.09 3.56 4.99 86.30 0.43 3.99 16 5 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 6 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 8 C 0.00 0.29 5.47 84.65 0.46 0.75 16 9 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 10 Si 0.95 45.25 27.47 68.60 1.88 47.13 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 14 C -0.09 -1.94 6.06 30.53 0.19 -1.75 16 15 C -0.16 -3.12 10.78 26.26 0.28 -2.84 16 16 C -0.17 -3.70 10.78 26.26 0.28 -3.42 16 17 C -0.09 -2.61 5.14 30.63 0.16 -2.45 16 18 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 19 H 0.04 1.35 6.27 -2.39 -0.01 1.33 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.34 10.43 8.77 -89.70 -0.79 9.64 16 22 H 0.02 0.91 6.27 -2.38 -0.01 0.90 16 23 H 0.05 2.22 7.45 -2.39 -0.02 2.20 16 24 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 25 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.08 1.53 7.91 -2.39 -0.02 1.52 16 29 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.06 1.67 7.91 -2.39 -0.02 1.65 16 32 H 0.07 2.10 8.08 -2.38 -0.02 2.08 16 Total: -1.00 -65.72 258.82 2.35 -63.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.24 Total: 13.48 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 2.78 Total: -38.32 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.54 Total: -85.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -65.72 2.35 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702174532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.957 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds