Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48535 * 110.99512 * 69.87694 * 13 3 2 15 15 C 1.54943 * 103.22546 * 159.65261 * 14 13 3 16 16 C 1.54552 * 102.94003 * 322.52942 * 15 14 13 17 17 H 1.09007 * 117.58386 * 242.98328 * 16 15 14 18 18 C 1.52947 * 118.19952 * 87.44547 * 16 15 14 19 19 C 1.47945 * 111.00088 * 187.24613 * 13 3 2 20 20 H 1.09002 * 117.37123 * 354.64839 * 19 13 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 1.09001 * 110.66618 * 278.08016 * 14 13 3 28 28 H 1.08999 * 110.66885 * 41.04919 * 14 13 3 29 29 H 1.08989 * 110.72239 * 80.89531 * 15 14 13 30 30 H 1.09004 * 110.71683 * 203.99185 * 15 14 13 31 31 H 1.09000 * 117.45045 * 15.86784 * 18 16 15 32 32 H 1.08995 * 117.45808 * 160.67198 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.4098 1.5422 2.4044 15 6 2.2873 2.6501 3.4806 16 6 2.3766 3.9506 2.6502 17 1 3.2197 4.6145 2.8412 18 6 1.0857 4.5230 2.0627 19 6 1.9748 3.5425 1.2208 20 1 2.5199 3.9133 0.3527 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 1.9543 0.6153 2.7530 28 1 3.4530 1.3787 2.1339 29 1 1.3278 2.5851 3.9935 30 1 3.1093 2.5875 4.1938 31 1 0.1429 4.1521 2.4648 32 1 1.0899 5.5720 1.7670 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706927352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = 32.346543 kcal Electronic energy + Delta-G solvation = -12926.837487 eV Core-core repulsion = 10888.202221 eV Total energy + Delta-G solvation = -2038.635266 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.91948 -34.86350 -31.85775 -30.59155 -29.15496 -26.03927 -22.99935 -22.53511 -20.38605 -19.41104 -18.98883 -16.32269 -15.63907 -14.48183 -14.25757 -13.26544 -13.03901 -12.75288 -12.27683 -12.15717 -11.88036 -11.34279 -11.12036 -10.93445 -10.60667 -10.45025 -10.39895 -9.96745 -9.87991 -9.64994 -9.36292 -9.16120 -8.96180 -8.36269 -7.08566 -5.99301 -4.12296 3.24880 3.33760 3.36864 4.20190 4.38968 4.90612 5.26154 5.37975 5.45363 5.72533 5.95790 6.07532 6.15530 6.22555 6.34584 6.38345 6.50204 6.59020 6.69791 6.73235 6.78087 6.95069 7.09574 7.20056 7.35052 7.60714 7.75623 7.99362 8.15740 8.28051 8.45330 8.98863 9.54815 11.00221 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032655 B = 0.014331 C = 0.011546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.252849 B = 1953.395200 C = 2424.482398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.206 3.794 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.493 5.493 14 C 0.040 3.960 15 C -0.095 4.095 16 C -0.190 4.190 17 H 0.097 0.903 18 C -0.159 4.159 19 C 0.022 3.978 20 H 0.112 0.888 21 H 0.039 0.961 22 H 0.025 0.975 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 3.415 6.638 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.099 3.901 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.216 5.216 14 C -0.088 4.088 15 C -0.133 4.133 16 C -0.209 4.209 17 H 0.115 0.885 18 C -0.197 4.197 19 C -0.088 4.088 20 H 0.129 0.871 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.678 3.190 6.496 7.717 hybrid contribution 2.008 0.105 -0.326 2.037 sum -0.670 3.296 6.170 7.027 Atomic orbital electron populations 1.21711 0.98872 0.98398 1.00594 1.21544 0.92253 0.99023 1.01869 1.19398 0.93232 0.91328 0.86092 0.94368 1.21813 0.92750 1.38052 1.05502 0.92160 1.24926 0.97820 0.95049 0.95690 1.69889 1.34692 1.38345 1.09384 0.86627 0.86213 0.77729 0.77975 1.19922 1.20994 1.21031 1.64474 1.51882 0.99585 1.05619 1.23412 0.99093 0.96390 0.89872 1.22097 1.00673 0.93391 0.97110 1.23486 0.98941 1.00010 0.98499 0.88503 1.23634 0.94576 0.97536 1.03975 1.24080 1.00519 0.90527 0.93677 0.87070 0.94210 0.95595 0.93410 0.95100 0.88956 0.92946 0.91663 0.91554 0.91978 0.92033 0.89331 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.11 -2.61 5.25 -26.73 -0.14 -2.75 16 3 C 0.21 5.14 1.66 -68.86 -0.11 5.02 16 4 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 5 C -0.54 -14.42 6.90 -34.44 -0.24 -14.66 16 6 H 0.06 1.62 6.05 -52.48 -0.32 1.30 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.49 -10.72 4.67 -213.56 -1.00 -11.72 16 14 C 0.04 0.80 5.54 -1.89 -0.01 0.79 16 15 C -0.09 -1.60 6.85 -24.89 -0.17 -1.77 16 16 C -0.19 -3.27 6.91 -89.32 -0.62 -3.89 16 17 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 18 C -0.16 -2.61 10.44 -24.67 -0.26 -2.87 16 19 C 0.02 0.44 6.10 -64.53 -0.39 0.05 16 20 H 0.11 2.41 7.73 -51.93 -0.40 2.01 16 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 24 H 0.03 0.73 7.05 -51.93 -0.37 0.36 16 25 H 0.09 2.47 5.95 -51.93 -0.31 2.16 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 28 H 0.07 1.47 5.54 -51.93 -0.29 1.19 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 252.67 15.07 3.81 3.81 Total: -1.00 -27.20 252.67 -8.25 -35.45 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.00 Total: 1.53 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.67 Total: -20.87 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.37 Total: -35.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.20 -8.25 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706927352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.797 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds