Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48535 * 110.99512 * 69.87694 * 13 3 2 15 15 C 1.54943 * 103.22546 * 159.65261 * 14 13 3 16 16 C 1.54552 * 102.94003 * 322.52942 * 15 14 13 17 17 H 1.09007 * 117.58386 * 242.98328 * 16 15 14 18 18 C 1.52947 * 118.19952 * 87.44547 * 16 15 14 19 19 C 1.47945 * 111.00088 * 187.24613 * 13 3 2 20 20 H 1.09002 * 117.37123 * 354.64839 * 19 13 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 1.09001 * 110.66618 * 278.08016 * 14 13 3 28 28 H 1.08999 * 110.66885 * 41.04919 * 14 13 3 29 29 H 1.08989 * 110.72239 * 80.89531 * 15 14 13 30 30 H 1.09004 * 110.71683 * 203.99185 * 15 14 13 31 31 H 1.09000 * 117.45045 * 15.86784 * 18 16 15 32 32 H 1.08995 * 117.45808 * 160.67198 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.4098 1.5422 2.4044 15 6 2.2873 2.6501 3.4806 16 6 2.3766 3.9506 2.6502 17 1 3.2197 4.6145 2.8412 18 6 1.0857 4.5230 2.0627 19 6 1.9748 3.5425 1.2208 20 1 2.5199 3.9133 0.3527 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 1.9543 0.6153 2.7530 28 1 3.4530 1.3787 2.1339 29 1 1.3278 2.5851 3.9935 30 1 3.1093 2.5875 4.1938 31 1 0.1429 4.1521 2.4648 32 1 1.0899 5.5720 1.7670 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706927352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = 16.476587 kcal Electronic energy + Delta-G solvation = -12927.525660 eV Core-core repulsion = 10888.202221 eV Total energy + Delta-G solvation = -2039.323439 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.48770 -36.68047 -33.84121 -32.23910 -30.73340 -27.99753 -24.87973 -24.04057 -21.99108 -20.90621 -20.80087 -18.32090 -17.35808 -16.29881 -15.87866 -14.99724 -14.88007 -14.40223 -13.94795 -13.71590 -13.52701 -13.15132 -12.85511 -12.76311 -12.35635 -12.11379 -12.00626 -11.73888 -11.65443 -11.48027 -11.14333 -10.73172 -10.67907 -10.44455 -8.84298 -8.03843 -6.26323 1.34777 1.37708 1.47425 2.38814 2.76026 3.14051 3.41890 3.90986 4.02850 4.32696 4.50578 4.57867 4.61194 4.69452 4.74904 4.89454 4.95654 5.00282 5.06447 5.14629 5.25555 5.32270 5.41920 5.46352 5.50672 5.62816 5.77015 6.04827 6.18108 6.41532 6.54558 6.96080 7.43955 8.91577 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032655 B = 0.014331 C = 0.011546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.252849 B = 1953.395200 C = 2424.482398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.214 3.786 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.491 5.491 14 C 0.036 3.964 15 C -0.086 4.086 16 C -0.176 4.176 17 H 0.112 0.888 18 C -0.127 4.127 19 C -0.027 4.027 20 H 0.083 0.917 21 H 0.031 0.969 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 4.195 8.405 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.214 5.214 14 C -0.092 4.092 15 C -0.124 4.124 16 C -0.195 4.195 17 H 0.130 0.870 18 C -0.165 4.165 19 C -0.137 4.137 20 H 0.100 0.900 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.768 3.982 8.279 9.595 hybrid contribution 2.018 -0.100 -0.865 2.198 sum -0.750 3.882 7.413 8.402 Atomic orbital electron populations 1.21569 0.96319 0.99853 1.00590 1.21395 0.94515 0.98084 1.00248 1.19130 0.92107 0.91553 0.86619 0.98355 1.22021 0.93841 1.37503 1.05270 0.92781 1.25650 1.01913 0.94974 0.95538 1.70017 1.36244 1.39110 1.09815 0.85661 0.81307 0.77729 0.77859 1.19547 1.20578 1.20790 1.64481 1.51854 1.00607 1.04461 1.23441 0.97236 0.97974 0.90521 1.22077 1.02543 0.91459 0.96285 1.23655 1.00009 1.00159 0.95673 0.86966 1.23732 0.94365 0.97754 1.00620 1.24058 1.04589 0.90246 0.94770 0.89961 0.94939 0.93387 0.92561 0.95204 0.91904 0.92950 0.91369 0.94235 0.90324 0.89789 0.88535 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 9.80 71.98 0.71 -4.51 16 2 C -0.10 -5.09 5.25 30.59 0.16 -4.93 16 3 C 0.21 10.96 1.66 44.17 0.07 11.03 16 4 H 0.00 -0.09 8.11 -2.39 -0.02 -0.11 16 5 C -0.55 -29.91 6.90 25.60 0.18 -29.73 16 6 H 0.05 2.97 6.05 -2.91 -0.02 2.95 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.49 -21.36 4.67 -829.56 -3.88 -25.23 16 14 C 0.04 1.41 5.54 86.65 0.48 1.89 16 15 C -0.09 -2.63 6.85 31.79 0.22 -2.41 16 16 C -0.18 -5.55 6.91 -9.95 -0.07 -5.62 16 17 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 18 C -0.13 -3.77 10.44 31.93 0.33 -3.44 16 19 C -0.03 -1.07 6.10 46.40 0.28 -0.79 16 20 H 0.08 3.70 7.73 -2.39 -0.02 3.68 16 21 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.03 1.42 7.05 -2.39 -0.02 1.40 16 25 H 0.06 3.46 5.95 -2.39 -0.01 3.44 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.07 2.59 7.63 -2.39 -0.02 2.58 16 28 H 0.04 1.76 5.54 -2.39 -0.01 1.75 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -59.18 252.67 2.28 -56.90 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.08 Total: 11.94 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.81 Total: -37.02 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -3.63 Total: -77.69 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.18 2.28 -56.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706927352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.378 kcal (2) G-P(sol) polarization free energy of solvation -59.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds