Wall clock time and date at job start Mon Mar 30 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 H 1.08999 * 109.47085 * 179.47785 * 3 2 1 5 5 C 1.50699 * 109.47375 * 59.47911 * 3 2 1 6 6 H 1.07997 * 120.00143 * 239.99808 * 5 3 2 7 7 C 1.37878 * 120.00007 * 60.00207 * 5 3 2 8 8 N 1.31513 * 120.00024 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47125 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47003 * 119.99922 * 9 7 5 12 12 H 1.48500 * 109.46509 * 239.99710 * 9 7 5 13 13 N 1.46896 * 109.47269 * 299.47661 * 3 2 1 14 14 C 1.48527 * 111.00225 * 300.12823 * 13 3 2 15 15 C 1.58361 * 103.39095 * 200.10295 * 14 13 3 16 16 C 1.54562 * 101.37222 * 37.63403 * 15 14 13 17 17 H 1.08993 * 117.57738 * 118.07271 * 16 15 14 18 18 C 1.52937 * 118.19765 * 273.61791 * 16 15 14 19 19 C 1.47949 * 111.00252 * 182.75026 * 13 3 2 20 20 H 1.08993 * 117.67595 * 5.01674 * 19 13 3 21 21 H 1.08998 * 109.47595 * 184.52734 * 1 2 3 22 22 H 1.09006 * 109.47532 * 304.52824 * 1 2 3 23 23 H 1.09008 * 109.46992 * 64.52056 * 1 2 3 24 24 H 1.08995 * 109.47299 * 239.99214 * 2 1 3 25 25 H 1.09002 * 109.46659 * 119.99622 * 2 1 3 26 26 H 0.97001 * 119.99823 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.66535 * 318.78007 * 14 13 3 28 28 H 1.09003 * 110.66665 * 81.74261 * 14 13 3 29 29 H 1.08991 * 110.54398 * 280.20057 * 15 14 13 30 30 H 1.09000 * 112.37281 * 155.86116 * 15 14 13 31 31 H 1.09002 * 117.45569 * 200.83137 * 18 16 15 32 32 H 1.08996 * 117.45915 * 345.62833 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4424 0.0094 5 6 1.5271 2.1566 1.2239 6 1 0.9072 3.0344 1.1169 7 6 1.8495 1.6894 2.4804 8 7 2.6041 0.6203 2.6109 9 14 1.2132 2.5743 3.9976 10 1 0.3919 3.7398 3.5828 11 1 0.3816 1.6430 4.8015 12 1 2.3611 3.0438 4.8145 13 7 1.5607 2.1313 -1.2057 14 6 2.0450 1.4523 -2.4347 15 6 1.9107 2.5702 -3.5483 16 6 2.3198 3.8356 -2.7608 17 1 3.2032 4.3769 -3.0992 18 6 1.2394 4.5762 -1.9713 19 6 2.0890 3.5116 -1.2731 20 1 2.8049 3.8175 -0.5103 21 1 -0.3634 -1.0244 0.0811 22 1 -0.3634 0.5825 0.8467 23 1 -0.3633 0.4421 -0.9278 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 2.8312 0.2918 3.4949 27 1 3.0839 1.1435 -2.3196 28 1 1.4148 0.5960 -2.6748 29 1 0.8791 2.6463 -3.8915 30 1 2.5861 2.4031 -4.3874 31 1 1.4296 5.6185 -1.7152 32 1 0.2002 4.3277 -2.1867 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706927354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:42 Heat of formation + Delta-G solvation = 31.845198 kcal Electronic energy + Delta-G solvation = -12914.024880 eV Core-core repulsion = 10875.367874 eV Total energy + Delta-G solvation = -2038.657006 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97182 -34.98450 -31.94884 -30.28766 -29.19949 -25.91007 -23.30575 -22.54082 -20.43433 -19.47439 -18.88750 -16.11469 -15.48035 -14.64881 -14.32174 -13.29193 -13.19306 -12.80580 -12.25783 -12.04226 -11.73287 -11.60521 -11.17971 -10.92135 -10.59776 -10.52054 -10.29187 -9.97664 -9.84740 -9.59811 -9.44414 -9.15233 -8.77430 -8.38233 -7.12757 -5.97828 -4.00488 3.31092 3.39342 3.44376 4.23174 4.44367 4.84905 5.25657 5.32298 5.37536 5.67600 5.84532 5.93593 5.99813 6.24133 6.26312 6.35677 6.47064 6.58778 6.59074 6.69242 6.75329 6.80031 7.13490 7.24419 7.45013 7.64771 7.74424 7.88399 8.16344 8.37313 8.59213 9.06360 9.63294 11.08943 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040348 B = 0.012992 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.803620 B = 2154.693709 C = 2547.235548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.210 3.790 4 H -0.001 1.001 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.486 5.486 14 C 0.040 3.960 15 C -0.092 4.092 16 C -0.206 4.206 17 H 0.098 0.902 18 C -0.150 4.150 19 C 0.033 3.967 20 H 0.109 0.891 21 H 0.015 0.985 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.012 0.988 25 H 0.092 0.908 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 2.914 -7.796 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.103 3.897 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.210 5.210 14 C -0.088 4.088 15 C -0.130 4.130 16 C -0.226 4.226 17 H 0.117 0.883 18 C -0.188 4.188 19 C -0.077 4.077 20 H 0.127 0.873 21 H 0.034 0.966 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.403 2.758 -7.595 8.201 hybrid contribution 0.649 0.414 0.921 1.201 sum -0.754 3.172 -6.674 7.427 Atomic orbital electron populations 1.21472 0.97255 0.97610 1.01471 1.21538 0.95276 0.98027 1.00034 1.19424 0.92965 0.91074 0.86207 0.98366 1.21091 1.30720 1.11740 0.89484 0.91908 1.24905 0.95311 0.95130 0.98879 1.69891 1.37467 1.23095 1.22927 0.86523 0.78601 0.79778 0.83049 1.19718 1.21087 1.21257 1.64285 1.54854 0.99433 1.02466 1.23964 0.97957 0.96719 0.90148 1.22621 1.00702 0.93216 0.96445 1.23558 1.01463 1.01024 0.96508 0.88349 1.23030 0.96676 0.96258 1.02857 1.23391 0.99729 0.91750 0.92813 0.87341 0.96555 0.92098 0.94243 0.96909 0.89017 0.93126 0.94700 0.90950 0.91491 0.91625 0.89271 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.53 37.16 0.35 -2.37 16 2 C -0.11 -2.68 5.21 -26.74 -0.14 -2.82 16 3 C 0.21 5.28 1.52 -68.87 -0.10 5.18 16 4 H 0.00 -0.03 8.12 -51.93 -0.42 -0.46 16 5 C -0.49 -13.35 6.62 -34.44 -0.23 -13.58 16 6 H 0.06 1.75 7.55 -52.49 -0.40 1.35 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.49 -10.63 4.40 -213.66 -0.94 -11.57 16 14 C 0.04 0.75 5.51 0.03 0.00 0.75 16 15 C -0.09 -1.44 7.10 -22.95 -0.16 -1.61 16 16 C -0.21 -3.40 6.96 -89.31 -0.62 -4.02 16 17 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 18 C -0.15 -2.54 10.22 -26.73 -0.27 -2.81 16 19 C 0.03 0.66 5.67 -66.59 -0.38 0.28 16 20 H 0.11 2.35 7.79 -51.93 -0.40 1.95 16 21 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 1.49 7.04 -51.93 -0.37 1.12 16 23 H 0.04 0.84 7.76 -51.92 -0.40 0.44 16 24 H 0.01 0.28 6.90 -51.93 -0.36 -0.08 16 25 H 0.09 2.47 6.08 -51.93 -0.32 2.15 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 28 H 0.07 1.32 7.64 -51.93 -0.40 0.92 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -27.88 254.27 -8.30 -36.18 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.15 Total: -0.57 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.65 Total: -19.48 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.31 Total: -36.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.88 -8.30 -36.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706927354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.022 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds