Wall clock time and date at job start Mon Mar 30 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 H 1.08999 * 109.47085 * 179.47785 * 3 2 1 5 5 C 1.50699 * 109.47375 * 59.47911 * 3 2 1 6 6 H 1.07997 * 120.00143 * 239.99808 * 5 3 2 7 7 C 1.37878 * 120.00007 * 60.00207 * 5 3 2 8 8 N 1.31513 * 120.00024 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47125 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47003 * 119.99922 * 9 7 5 12 12 H 1.48500 * 109.46509 * 239.99710 * 9 7 5 13 13 N 1.46896 * 109.47269 * 299.47661 * 3 2 1 14 14 C 1.48527 * 111.00225 * 300.12823 * 13 3 2 15 15 C 1.58361 * 103.39095 * 200.10295 * 14 13 3 16 16 C 1.54562 * 101.37222 * 37.63403 * 15 14 13 17 17 H 1.08993 * 117.57738 * 118.07271 * 16 15 14 18 18 C 1.52937 * 118.19765 * 273.61791 * 16 15 14 19 19 C 1.47949 * 111.00252 * 182.75026 * 13 3 2 20 20 H 1.08993 * 117.67595 * 5.01674 * 19 13 3 21 21 H 1.08998 * 109.47595 * 184.52734 * 1 2 3 22 22 H 1.09006 * 109.47532 * 304.52824 * 1 2 3 23 23 H 1.09008 * 109.46992 * 64.52056 * 1 2 3 24 24 H 1.08995 * 109.47299 * 239.99214 * 2 1 3 25 25 H 1.09002 * 109.46659 * 119.99622 * 2 1 3 26 26 H 0.97001 * 119.99823 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.66535 * 318.78007 * 14 13 3 28 28 H 1.09003 * 110.66665 * 81.74261 * 14 13 3 29 29 H 1.08991 * 110.54398 * 280.20057 * 15 14 13 30 30 H 1.09000 * 112.37281 * 155.86116 * 15 14 13 31 31 H 1.09002 * 117.45569 * 200.83137 * 18 16 15 32 32 H 1.08996 * 117.45915 * 345.62833 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4424 0.0094 5 6 1.5271 2.1566 1.2239 6 1 0.9072 3.0344 1.1169 7 6 1.8495 1.6894 2.4804 8 7 2.6041 0.6203 2.6109 9 14 1.2132 2.5743 3.9976 10 1 0.3919 3.7398 3.5828 11 1 0.3816 1.6430 4.8015 12 1 2.3611 3.0438 4.8145 13 7 1.5607 2.1313 -1.2057 14 6 2.0450 1.4523 -2.4347 15 6 1.9107 2.5702 -3.5483 16 6 2.3198 3.8356 -2.7608 17 1 3.2032 4.3769 -3.0992 18 6 1.2394 4.5762 -1.9713 19 6 2.0890 3.5116 -1.2731 20 1 2.8049 3.8175 -0.5103 21 1 -0.3634 -1.0244 0.0811 22 1 -0.3634 0.5825 0.8467 23 1 -0.3633 0.4421 -0.9278 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 2.8312 0.2918 3.4949 27 1 3.0839 1.1435 -2.3196 28 1 1.4148 0.5960 -2.6748 29 1 0.8791 2.6463 -3.8915 30 1 2.5861 2.4031 -4.3874 31 1 1.4296 5.6185 -1.7152 32 1 0.2002 4.3277 -2.1867 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706927354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:42 Heat of formation + Delta-G solvation = 15.469972 kcal Electronic energy + Delta-G solvation = -12914.734963 eV Core-core repulsion = 10875.367874 eV Total energy + Delta-G solvation = -2039.367089 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50002 -36.82916 -33.89404 -31.98307 -30.78209 -27.85810 -25.24384 -24.02313 -22.01836 -20.91334 -20.69908 -18.08613 -17.30515 -16.24229 -16.12558 -15.12770 -14.87222 -14.52204 -13.91222 -13.61037 -13.43677 -13.26495 -12.83515 -12.69702 -12.41552 -12.38505 -11.93023 -11.66673 -11.61344 -11.42346 -11.08949 -10.82308 -10.65540 -10.44434 -8.83383 -8.08732 -6.17952 1.39063 1.41588 1.53057 2.42784 2.81547 3.18402 3.35780 3.84361 3.99057 4.34783 4.40441 4.51387 4.58135 4.60492 4.72064 4.84399 4.88064 4.95336 5.05131 5.13651 5.21069 5.24601 5.37144 5.46099 5.50776 5.73733 5.74801 5.85389 6.29291 6.43532 6.68453 6.95183 7.49561 8.97314 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040348 B = 0.012992 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.803620 B = 2154.693709 C = 2547.235548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C 0.217 3.783 4 H -0.045 1.045 5 C -0.498 4.498 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.492 5.492 14 C 0.032 3.968 15 C -0.081 4.081 16 C -0.180 4.180 17 H 0.121 0.879 18 C -0.133 4.133 19 C -0.017 4.017 20 H 0.080 0.920 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.260 0.740 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 3.790 -9.219 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C 0.110 3.890 4 H -0.028 1.028 5 C -0.537 4.537 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.216 5.216 14 C -0.096 4.096 15 C -0.119 4.119 16 C -0.199 4.199 17 H 0.139 0.861 18 C -0.171 4.171 19 C -0.126 4.126 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.260 3.645 -9.035 10.002 hybrid contribution 0.957 0.151 1.317 1.635 sum -1.303 3.796 -7.718 8.699 Atomic orbital electron populations 1.21320 0.95651 0.98630 1.00890 1.21417 0.96570 0.97265 0.99259 1.19167 0.90245 0.91975 0.87595 1.02757 1.21230 1.30353 1.11420 0.90655 0.93033 1.25623 0.95559 0.95820 1.01556 1.70019 1.38423 1.24239 1.23467 0.85583 0.78086 0.78782 0.79688 1.19315 1.20608 1.20883 1.64260 1.54826 1.00336 1.02132 1.24085 0.97240 0.98072 0.90189 1.22645 1.02294 0.90961 0.95958 1.23744 1.01878 1.00803 0.93455 0.86123 1.23111 0.96593 0.96407 1.00979 1.23355 1.02151 0.91961 0.95127 0.90257 0.94373 0.94505 0.93132 0.95395 0.91992 0.93111 0.95921 0.90379 0.90353 0.88500 0.87165 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.53 71.98 0.69 -4.10 16 2 C -0.11 -5.25 5.21 30.59 0.16 -5.09 16 3 C 0.22 11.30 1.52 44.17 0.07 11.37 16 4 H -0.05 -2.66 8.12 -2.39 -0.02 -2.68 16 5 C -0.50 -27.76 6.62 25.60 0.17 -27.59 16 6 H 0.05 2.93 7.55 -2.91 -0.02 2.91 16 7 C 0.01 0.70 5.30 84.66 0.45 1.15 16 8 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.49 -21.49 4.40 -829.89 -3.65 -25.14 16 14 C 0.03 1.15 5.51 87.90 0.48 1.64 16 15 C -0.08 -2.26 7.10 33.04 0.23 -2.03 16 16 C -0.18 -5.41 6.96 -9.95 -0.07 -5.48 16 17 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 18 C -0.13 -4.18 10.22 30.59 0.31 -3.87 16 19 C -0.02 -0.66 5.67 45.07 0.26 -0.41 16 20 H 0.08 3.58 7.79 -2.39 -0.02 3.57 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.04 1.79 7.04 -2.38 -0.02 1.77 16 23 H 0.05 2.10 7.76 -2.38 -0.02 2.08 16 24 H 0.03 1.25 6.90 -2.39 -0.02 1.23 16 25 H 0.06 3.43 6.08 -2.39 -0.01 3.41 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 28 H 0.08 2.71 7.64 -2.39 -0.02 2.69 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -60.89 254.27 2.43 -58.45 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.07 Total: 8.05 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 2.75 Total: -34.41 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -3.41 Total: -78.63 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.89 2.43 -58.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706927354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.922 kcal (2) G-P(sol) polarization free energy of solvation -60.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds