Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52114 * 111.37664 * 2 1 4 4 C 1.53073 * 109.43383 * 177.61804 * 3 2 1 5 5 C 1.52574 * 108.74581 * 297.31893 * 4 3 2 6 6 C 1.51531 * 111.29220 * 63.75467 * 5 4 3 7 7 C 1.51512 * 114.02696 * 311.96008 * 6 5 4 8 8 H 1.09003 * 113.49565 * 256.89714 * 7 6 5 9 9 C 1.54097 * 112.22893 * 126.03562 * 7 6 5 10 10 N 1.46516 * 112.39532 * 229.41070 * 2 1 3 11 11 C 1.36936 * 136.55050 * 95.24706 * 10 2 1 12 12 H 1.07998 * 119.99873 * 0.02562 * 11 10 2 13 13 C 1.38814 * 119.99996 * 180.02562 * 11 10 2 14 14 N 1.31617 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99910 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46985 * 60.00706 * 15 13 11 17 17 H 1.48504 * 109.47034 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47528 * 300.00313 * 15 13 11 19 19 H 1.09005 * 109.47276 * 171.08369 * 1 2 3 20 20 H 1.08996 * 109.47633 * 291.08460 * 1 2 3 21 21 H 1.09006 * 109.47231 * 51.08426 * 1 2 3 22 22 H 1.08999 * 109.47374 * 297.60921 * 3 2 1 23 23 H 1.09003 * 109.47214 * 57.63153 * 3 2 1 24 24 H 1.08995 * 109.59010 * 177.54409 * 4 3 2 25 25 H 1.08995 * 109.71464 * 57.16867 * 4 3 2 26 26 H 1.08998 * 109.12208 * 303.27767 * 5 4 3 27 27 H 1.09007 * 109.10992 * 184.21250 * 5 4 3 28 28 H 1.09002 * 108.56941 * 190.79169 * 6 5 4 29 29 H 1.08999 * 108.46040 * 73.05729 * 6 5 4 30 30 H 1.09000 * 113.53108 * 156.34366 * 9 7 6 31 31 H 1.08998 * 113.53338 * 25.69445 * 9 7 6 32 32 H 0.97007 * 119.99771 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0844 1.4165 0.0000 4 6 3.6131 1.3651 0.0600 5 6 4.0304 0.7054 1.3709 6 6 3.5645 -0.7351 1.4348 7 6 2.1104 -0.9305 1.0568 8 1 1.4553 -1.0844 1.9143 9 6 1.9338 -1.9788 -0.0587 10 7 2.0882 -0.8814 -1.0287 11 6 2.5466 -0.7459 -2.3119 12 1 2.5400 0.2234 -2.7882 13 6 3.0196 -1.8545 -3.0007 14 7 3.0270 -3.0358 -2.4204 15 14 3.6455 -1.6695 -4.7509 16 1 4.7878 -0.7209 -4.7703 17 1 4.0909 -2.9917 -5.2596 18 1 2.5551 -1.1492 -5.6143 19 1 -0.3634 -1.0153 -0.1593 20 1 -0.3634 0.3697 0.9588 21 1 -0.3634 0.6456 -0.7996 22 1 1.7734 1.9285 -0.9106 23 1 1.7045 1.9554 0.8680 24 1 4.0148 2.3773 0.0162 25 1 3.9946 0.7837 -0.7793 26 1 3.5955 1.2586 2.2033 27 1 5.1170 0.7331 1.4543 28 1 3.7116 -1.1028 2.4504 29 1 4.1815 -1.3277 0.7594 30 1 0.9446 -2.4364 -0.0732 31 1 2.7397 -2.7116 -0.0988 32 1 3.3572 -3.8105 -2.9018 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707184720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = 41.867233 kcal Electronic energy + Delta-G solvation = -13266.764701 eV Core-core repulsion = 11228.542284 eV Total energy + Delta-G solvation = -2038.222418 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80390 -34.05457 -32.10756 -31.01930 -28.52467 -26.24938 -24.69270 -22.83990 -20.86042 -20.02448 -17.71594 -15.96599 -15.01337 -14.46923 -13.82525 -13.69420 -13.45892 -13.15210 -12.42842 -11.96838 -11.60296 -11.21439 -11.02832 -10.86683 -10.78703 -10.68076 -10.42237 -10.24909 -9.96688 -9.66060 -9.43111 -9.31843 -8.70166 -8.62059 -6.73386 -5.67227 -2.96963 3.43572 3.47870 3.48812 4.51435 5.14848 5.35661 5.43678 5.63208 5.71983 5.80256 5.97239 6.05974 6.21176 6.26149 6.34021 6.41744 6.48321 6.53121 6.64120 6.68298 6.75486 6.84794 6.97198 7.08127 7.14852 7.25464 7.42456 7.59558 7.67763 8.08949 9.13747 9.81278 10.80558 11.50633 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.014087 C = 0.013529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.719890 B = 1987.221954 C = 2069.147816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 C -0.106 4.106 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.084 4.084 7 C -0.134 4.134 8 H 0.059 0.941 9 C 0.152 3.848 10 N -0.591 5.591 11 C -0.204 4.204 12 H 0.077 0.923 13 C -0.010 4.010 14 N -0.921 5.921 15 Si 0.907 3.093 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.287 1.287 19 H 0.055 0.945 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 5.831 6.915 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 C -0.144 4.144 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.121 4.121 7 C -0.153 4.153 8 H 0.077 0.923 9 C 0.026 3.974 10 N -0.315 5.315 11 C -0.331 4.331 12 H 0.095 0.905 13 C -0.206 4.206 14 N -0.569 5.569 15 Si 0.737 3.263 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.214 1.214 19 H 0.074 0.926 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.613 5.689 6.560 8.705 hybrid contribution 0.063 -0.025 -1.097 1.099 sum -0.550 5.663 5.464 7.889 Atomic orbital electron populations 1.22204 0.97965 1.01616 0.99668 1.20854 0.91385 0.90866 0.88791 1.21368 0.95982 0.97115 0.99959 1.21374 0.95853 0.98920 0.99033 1.21004 0.99244 0.96461 0.97514 1.20497 0.95507 0.96478 0.99653 1.22621 0.95759 1.00811 0.96115 0.92260 1.22455 0.98472 0.91884 0.84592 1.45579 1.70380 1.04304 1.11189 1.18782 1.33111 0.94061 0.87179 0.90498 1.24728 1.02334 0.95388 0.98188 1.69823 1.52061 0.98476 1.36503 0.86276 0.78676 0.76565 0.84737 1.21206 1.21713 1.21398 0.92553 0.93810 0.93482 0.92932 0.93177 0.93949 0.89561 0.93660 0.93225 0.93771 0.91415 0.96109 0.91091 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.04 37.16 0.34 -2.58 16 2 C 0.17 3.53 1.40 -141.12 -0.20 3.33 16 3 C -0.11 -1.97 5.17 -27.14 -0.14 -2.11 16 4 C -0.11 -2.11 5.78 -26.91 -0.16 -2.27 16 5 C -0.10 -1.76 5.82 -27.69 -0.16 -1.92 16 6 C -0.08 -1.55 5.55 -28.23 -0.16 -1.71 16 7 C -0.13 -2.63 4.09 -91.16 -0.37 -3.01 16 8 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 9 C 0.15 3.63 6.45 -11.55 -0.07 3.56 16 10 N -0.59 -14.92 2.87 -178.97 -0.51 -15.44 16 11 C -0.20 -5.66 9.48 -15.06 -0.14 -5.80 16 12 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 13 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 14 N -0.92 -27.56 11.55 55.49 0.64 -26.91 16 15 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H 0.06 1.12 6.64 -51.93 -0.34 0.78 16 20 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 1.90 6.69 -51.93 -0.35 1.56 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.45 7.44 -51.93 -0.39 1.07 16 30 H 0.02 0.51 6.92 -51.93 -0.36 0.15 16 31 H 0.07 1.88 6.75 -51.93 -0.35 1.53 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 247.33 15.07 3.73 3.73 Total: -1.00 -29.41 247.33 -7.46 -36.88 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.13 Total: -2.75 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.16 Total: -12.89 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.13 Total: -42.35 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.41 -7.46 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707184720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.742 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds