Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 C 1.53004 * 109.47121 * 240.00642 * 2 1 3 5 5 C 1.50696 * 109.47436 * 175.00139 * 4 2 1 6 6 H 1.08000 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00182 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00553 * 9 7 5 11 11 H 1.48503 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47328 * 300.00111 * 9 7 5 13 13 N 1.46899 * 109.47698 * 120.00731 * 2 1 3 14 14 C 1.48033 * 111.46517 * 54.30191 * 13 2 1 15 15 C 1.54931 * 103.45868 * 200.59830 * 14 13 2 16 16 C 1.54553 * 102.94514 * 37.08656 * 15 14 13 17 17 H 1.08997 * 117.58214 * 117.01118 * 16 15 14 18 18 C 1.52940 * 118.19926 * 274.42927 * 16 15 14 19 19 C 1.47943 * 110.99587 * 296.32058 * 13 2 1 20 20 H 1.09005 * 117.37291 * 5.35168 * 19 13 2 21 21 H 1.09002 * 109.47213 * 52.94386 * 1 2 3 22 22 H 1.09000 * 109.47551 * 172.94598 * 1 2 3 23 23 H 1.09006 * 109.46936 * 292.94959 * 1 2 3 24 24 H 1.09006 * 109.46837 * 295.00113 * 4 2 1 25 25 H 1.09003 * 109.47016 * 54.99800 * 4 2 1 26 26 H 0.97000 * 120.00274 * 179.97438 * 8 7 5 27 27 H 1.09006 * 110.88094 * 81.93471 * 14 13 2 28 28 H 1.08991 * 110.23363 * 318.96179 * 14 13 2 29 29 H 1.09003 * 110.72243 * 278.72296 * 15 14 13 30 30 H 1.08998 * 110.72231 * 155.45144 * 15 14 13 31 31 H 1.09004 * 117.45732 * 344.11942 * 18 16 15 32 32 H 1.09001 * 117.45517 * 199.35148 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3580 8 7 3.5763 -1.8384 -3.2992 9 14 6.0919 -1.0610 -2.4371 10 1 6.6844 -1.6863 -1.2275 11 1 6.5869 -1.7621 -3.6490 12 1 6.4843 0.3699 -2.4974 13 7 2.0197 -0.6926 1.1993 14 6 1.4425 -2.0509 1.3141 15 6 1.6176 -2.3914 2.8154 16 6 1.3566 -1.0360 3.5106 17 1 0.5014 -0.9702 4.1832 18 6 2.5265 -0.0619 3.6574 19 6 1.6191 0.0274 2.4280 20 1 0.9627 0.8899 2.3120 21 1 -0.3634 0.6193 -0.8201 22 1 -0.3634 -1.0199 -0.1262 23 1 -0.3633 0.4007 0.9464 24 1 1.7515 -1.7714 -1.2058 25 1 1.6053 -0.2615 -2.1370 26 1 4.0607 -2.2451 -4.0347 27 1 1.9899 -2.7596 0.6926 28 1 0.3868 -2.0359 1.0436 29 1 2.6309 -2.7390 3.0164 30 1 0.8845 -3.1339 3.1305 31 1 3.5316 -0.4581 3.5125 32 1 2.4353 0.7236 4.4075 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710001656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = 32.049864 kcal Electronic energy + Delta-G solvation = -12705.635170 eV Core-core repulsion = 10666.987039 eV Total energy + Delta-G solvation = -2038.648131 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54345 -35.10261 -32.37204 -30.57281 -28.34306 -27.24425 -23.21554 -22.95067 -20.80701 -19.85285 -18.70146 -16.20336 -15.92253 -14.62221 -14.33254 -13.99871 -13.35062 -12.97285 -12.48163 -12.12876 -11.76727 -11.65365 -11.41766 -11.18487 -10.87570 -10.65287 -10.55999 -10.36805 -9.99222 -9.84507 -9.52964 -9.12602 -8.97487 -8.23349 -7.39828 -5.86261 -3.84151 3.43159 3.46329 3.50585 3.91297 4.51271 4.59035 5.05977 5.12672 5.41171 5.49978 5.59529 5.63506 5.73799 5.88175 5.94582 5.99553 6.08670 6.13854 6.15276 6.38178 6.49162 6.55116 6.65015 6.77634 7.00208 7.53859 7.67902 7.85809 8.04839 8.15458 8.60913 9.21816 9.77486 11.25702 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.010827 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.808704 B = 2585.471901 C = 2853.133307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.469 5.469 14 C 0.042 3.958 15 C -0.094 4.094 16 C -0.191 4.191 17 H 0.102 0.898 18 C -0.144 4.144 19 C -0.004 4.004 20 H 0.102 0.898 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.258 0.742 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 1.432 10.986 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.006 4.006 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.191 5.191 14 C -0.085 4.085 15 C -0.132 4.132 16 C -0.210 4.210 17 H 0.120 0.880 18 C -0.182 4.182 19 C -0.113 4.113 20 H 0.119 0.881 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.636 1.305 10.725 11.757 hybrid contribution 0.087 0.125 -0.089 0.177 sum -4.548 1.431 10.637 11.656 Atomic orbital electron populations 1.22539 0.99683 1.01526 1.00455 1.22022 0.90122 0.98579 0.92007 0.91158 1.19165 0.96381 0.95292 0.89766 1.21151 0.91813 1.33013 1.07015 0.92181 1.25008 0.98055 0.95864 0.95972 1.69957 1.35312 1.36916 1.12370 0.86680 0.86330 0.78012 0.77058 1.20368 1.21666 1.20481 1.63998 1.54697 1.00881 0.99554 1.23361 0.98083 0.91861 0.95209 1.22100 1.01672 0.94719 0.94740 1.23558 1.01186 0.92818 1.03483 0.87958 1.23077 0.96138 1.00328 0.98674 1.23590 1.01480 0.98915 0.87334 0.88071 0.92642 0.92702 0.94018 0.96398 0.96321 0.93285 0.89350 0.93855 0.91006 0.91496 0.88584 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 37.15 0.31 -2.92 16 2 C 0.08 1.71 2.26 -67.72 -0.15 1.55 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.03 0.81 4.40 -27.88 -0.12 0.68 16 5 C -0.49 -14.08 8.84 -34.44 -0.30 -14.38 16 6 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 9 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 N -0.47 -9.35 4.90 -215.04 -1.05 -10.40 16 14 C 0.04 0.77 5.47 -2.18 -0.01 0.76 16 15 C -0.09 -1.42 6.86 -24.90 -0.17 -1.59 16 16 C -0.19 -2.74 7.05 -89.31 -0.63 -3.36 16 17 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.14 -2.09 10.24 -26.73 -0.27 -2.36 16 19 C 0.00 -0.06 5.77 -66.59 -0.38 -0.45 16 20 H 0.10 1.58 6.90 -51.93 -0.36 1.22 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.97 6.39 -51.93 -0.33 0.64 16 23 H 0.04 0.65 6.48 -51.93 -0.34 0.32 16 24 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.09 1.81 7.62 -51.93 -0.40 1.42 16 28 H 0.04 0.76 5.60 -51.93 -0.29 0.47 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 254.85 15.07 3.84 3.84 Total: -1.00 -30.18 254.85 -8.33 -38.51 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.00 Total: -1.77 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.84 Total: -20.71 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.32 Total: -37.26 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.18 -8.33 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710001656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.559 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds