Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 C 1.53004 * 109.47121 * 240.00642 * 2 1 3 5 5 C 1.50696 * 109.47436 * 175.00139 * 4 2 1 6 6 H 1.08000 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00182 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00553 * 9 7 5 11 11 H 1.48503 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47328 * 300.00111 * 9 7 5 13 13 N 1.46899 * 109.47698 * 120.00731 * 2 1 3 14 14 C 1.48033 * 111.46517 * 54.30191 * 13 2 1 15 15 C 1.54931 * 103.45868 * 200.59830 * 14 13 2 16 16 C 1.54553 * 102.94514 * 37.08656 * 15 14 13 17 17 H 1.08997 * 117.58214 * 117.01118 * 16 15 14 18 18 C 1.52940 * 118.19926 * 274.42927 * 16 15 14 19 19 C 1.47943 * 110.99587 * 296.32058 * 13 2 1 20 20 H 1.09005 * 117.37291 * 5.35168 * 19 13 2 21 21 H 1.09002 * 109.47213 * 52.94386 * 1 2 3 22 22 H 1.09000 * 109.47551 * 172.94598 * 1 2 3 23 23 H 1.09006 * 109.46936 * 292.94959 * 1 2 3 24 24 H 1.09006 * 109.46837 * 295.00113 * 4 2 1 25 25 H 1.09003 * 109.47016 * 54.99800 * 4 2 1 26 26 H 0.97000 * 120.00274 * 179.97438 * 8 7 5 27 27 H 1.09006 * 110.88094 * 81.93471 * 14 13 2 28 28 H 1.08991 * 110.23363 * 318.96179 * 14 13 2 29 29 H 1.09003 * 110.72243 * 278.72296 * 15 14 13 30 30 H 1.08998 * 110.72231 * 155.45144 * 15 14 13 31 31 H 1.09004 * 117.45732 * 344.11942 * 18 16 15 32 32 H 1.09001 * 117.45517 * 199.35148 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3580 8 7 3.5763 -1.8384 -3.2992 9 14 6.0919 -1.0610 -2.4371 10 1 6.6844 -1.6863 -1.2275 11 1 6.5869 -1.7621 -3.6490 12 1 6.4843 0.3699 -2.4974 13 7 2.0197 -0.6926 1.1993 14 6 1.4425 -2.0509 1.3141 15 6 1.6176 -2.3914 2.8154 16 6 1.3566 -1.0360 3.5106 17 1 0.5014 -0.9702 4.1832 18 6 2.5265 -0.0619 3.6574 19 6 1.6191 0.0274 2.4280 20 1 0.9627 0.8899 2.3120 21 1 -0.3634 0.6193 -0.8201 22 1 -0.3634 -1.0199 -0.1262 23 1 -0.3633 0.4007 0.9464 24 1 1.7515 -1.7714 -1.2058 25 1 1.6053 -0.2615 -2.1370 26 1 4.0607 -2.2451 -4.0347 27 1 1.9899 -2.7596 0.6926 28 1 0.3868 -2.0359 1.0436 29 1 2.6309 -2.7390 3.0164 30 1 0.8845 -3.1339 3.1305 31 1 3.5316 -0.4581 3.5125 32 1 2.4353 0.7236 4.4075 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710001656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = 13.012873 kcal Electronic energy + Delta-G solvation = -12706.460675 eV Core-core repulsion = 10666.987039 eV Total energy + Delta-G solvation = -2039.473637 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.89350 -36.71971 -34.48032 -31.96064 -30.02996 -28.99060 -25.22427 -24.30260 -22.27333 -21.07057 -20.24243 -18.37711 -17.40025 -16.48222 -15.93744 -15.42839 -14.86380 -14.42979 -14.23298 -13.69254 -13.40689 -13.35461 -12.94269 -12.67211 -12.61216 -12.49347 -12.25267 -11.89354 -11.74708 -11.19962 -11.11585 -11.00889 -10.73332 -10.49353 -8.83974 -8.12007 -6.17535 1.39913 1.43159 1.50757 2.45873 2.70160 3.13841 3.25560 3.85164 3.89182 4.20958 4.23463 4.30567 4.38991 4.50434 4.57782 4.58274 4.80377 4.92128 4.95676 5.01769 5.11075 5.16714 5.21019 5.28967 5.41599 5.49468 5.69572 5.86840 6.27111 6.33584 6.54154 6.95723 7.48362 8.99785 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.010827 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.808704 B = 2585.471901 C = 2853.133307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 H 0.061 0.939 4 C 0.038 3.962 5 C -0.504 4.504 6 H 0.054 0.946 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.498 5.498 14 C 0.040 3.960 15 C -0.091 4.091 16 C -0.170 4.170 17 H 0.134 0.866 18 C -0.137 4.137 19 C -0.029 4.029 20 H 0.114 0.886 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.069 0.931 24 H -0.006 1.006 25 H -0.007 1.007 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 2.046 13.066 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 H 0.080 0.920 4 C 0.000 4.000 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.220 5.220 14 C -0.088 4.088 15 C -0.128 4.128 16 C -0.189 4.189 17 H 0.152 0.848 18 C -0.175 4.175 19 C -0.138 4.138 20 H 0.132 0.868 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.788 1.928 12.822 13.822 hybrid contribution 0.131 -0.081 -0.737 0.752 sum -4.658 1.847 12.086 13.083 Atomic orbital electron populations 1.22387 0.96873 1.01638 1.02118 1.21690 0.92336 0.97191 0.90720 0.92040 1.19010 0.95249 0.94182 0.91514 1.21449 0.93315 1.32700 1.06789 0.92741 1.25874 1.03087 0.95510 0.95628 1.70086 1.37232 1.37804 1.13002 0.85606 0.80338 0.78452 0.77232 1.19812 1.21047 1.19414 1.63854 1.55889 1.01800 1.00502 1.23313 0.97674 0.90681 0.97093 1.22087 1.02167 0.96242 0.92342 1.23671 1.01881 0.91081 1.02239 0.84835 1.23182 0.95220 1.01133 0.97967 1.23672 1.03619 1.00132 0.86375 0.86849 0.92268 0.93061 0.91256 0.98806 0.98923 0.93183 0.93093 0.93160 0.91840 0.88705 0.90338 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.37 71.98 0.60 -5.28 16 2 C 0.09 3.80 2.26 44.91 0.10 3.90 16 3 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.04 2.03 4.40 29.85 0.13 2.16 16 5 C -0.50 -29.66 8.84 25.60 0.23 -29.44 16 6 H 0.05 3.20 7.74 -2.91 -0.02 3.17 16 7 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 9 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.50 -19.71 4.90 -834.24 -4.09 -23.80 16 14 C 0.04 1.45 5.47 86.75 0.47 1.92 16 15 C -0.09 -2.55 6.86 31.78 0.22 -2.33 16 16 C -0.17 -4.24 7.05 -9.95 -0.07 -4.31 16 17 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 18 C -0.14 -3.56 10.24 30.59 0.31 -3.24 16 19 C -0.03 -0.90 5.77 45.07 0.26 -0.64 16 20 H 0.11 3.18 6.90 -2.38 -0.02 3.16 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.78 6.39 -2.39 -0.02 1.77 16 23 H 0.07 2.00 6.48 -2.38 -0.02 1.98 16 24 H -0.01 -0.37 6.91 -2.38 -0.02 -0.39 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 27 H 0.05 2.19 7.62 -2.38 -0.02 2.18 16 28 H 0.05 1.74 5.60 -2.39 -0.01 1.73 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.05 254.85 2.02 -64.03 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.08 Total: 6.78 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 2.72 Total: -37.08 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -3.80 Total: -82.26 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -66.05 2.02 -64.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710001656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.047 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds