Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46955 * 2 1 4 4 C 1.50703 * 109.47090 * 239.99998 * 2 1 3 5 5 H 1.07991 * 120.00106 * 240.00008 * 4 2 1 6 6 C 1.37882 * 119.99696 * 59.99715 * 4 2 1 7 7 N 1.31512 * 120.00083 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99472 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47136 * 90.00719 * 8 6 4 10 10 H 1.48503 * 109.46768 * 210.00195 * 8 6 4 11 11 H 1.48496 * 109.47336 * 330.00197 * 8 6 4 12 12 N 1.46902 * 109.46951 * 120.00147 * 2 1 3 13 13 C 1.46896 * 110.99754 * 273.25614 * 12 2 1 14 14 C 1.53000 * 119.75445 * 90.16550 * 13 12 2 15 15 C 1.52998 * 60.37717 * 111.12242 * 14 13 12 16 16 H 1.09006 * 119.75514 * 248.87623 * 15 14 13 17 17 C 1.54272 * 118.20385 * 93.61889 * 15 14 13 18 18 C 1.54888 * 104.19120 * 272.20920 * 17 15 14 19 19 C 1.54274 * 117.41324 * 294.71022 * 13 12 2 20 20 H 1.08997 * 109.46930 * 299.99832 * 1 2 3 21 21 H 1.08997 * 109.47418 * 59.99950 * 1 2 3 22 22 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99813 * 179.97438 * 7 6 4 24 24 H 1.00902 * 110.99554 * 149.30255 * 12 2 1 25 25 H 1.09000 * 117.45634 * 218.71433 * 14 13 12 26 26 H 1.08996 * 117.46405 * 3.51995 * 14 13 12 27 27 H 1.09001 * 110.48661 * 153.52878 * 17 15 14 28 28 H 1.09005 * 110.48057 * 30.88740 * 17 15 14 29 29 H 1.08998 * 110.75468 * 279.62275 * 18 17 15 30 30 H 1.09007 * 110.75112 * 156.25275 * 18 17 15 31 31 H 1.09000 * 110.48472 * 2.31118 * 19 13 12 32 32 H 1.08995 * 110.48279 * 124.95487 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.1217 0.2321 2.3363 14 6 0.9253 0.4208 3.2713 15 6 2.1825 -0.2842 3.7846 16 1 2.1516 -1.3507 4.0079 17 6 3.2485 0.5626 4.5100 18 6 4.1609 1.0815 3.3711 19 6 3.1529 1.3748 2.2322 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7094 1.1618 -3.4844 24 1 2.9039 -1.1445 1.0204 25 1 0.7286 1.4280 3.6386 26 1 0.0434 -0.1933 3.0894 27 1 3.8186 -0.0548 5.2043 28 1 2.7814 1.3962 5.0345 29 1 4.8741 0.3150 3.0679 30 1 4.6769 1.9926 3.6742 31 1 3.6533 1.3500 1.2642 32 1 2.6704 2.3394 2.3888 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710353543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = 14.279527 kcal Electronic energy + Delta-G solvation = -12613.406059 eV Core-core repulsion = 10573.987349 eV Total energy + Delta-G solvation = -2039.418710 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20324 -34.78902 -32.03825 -30.86938 -28.23967 -26.67792 -25.03307 -22.07654 -20.61182 -19.63089 -18.18672 -16.54495 -15.40500 -14.79624 -14.68373 -13.54430 -13.05879 -12.86440 -12.64092 -12.21311 -11.81088 -11.41069 -10.95433 -10.83815 -10.73789 -10.62658 -10.49747 -10.38618 -10.07695 -10.06955 -9.67836 -8.82095 -8.69131 -8.45526 -7.26937 -6.00333 -4.06951 3.30576 3.36843 3.39820 4.12794 4.41556 4.86912 5.05150 5.15330 5.29789 5.36803 5.59450 5.79785 5.92100 5.95638 6.04831 6.10951 6.19890 6.23297 6.43563 6.56340 6.70566 6.72201 6.98324 7.23343 7.32363 7.59607 7.81107 7.96159 8.30782 8.43672 8.73663 9.04835 9.58795 11.05656 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057246 B = 0.009395 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.997110 B = 2979.661464 C = 3160.618482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.651 5.651 13 C 0.045 3.955 14 C -0.131 4.131 15 C -0.173 4.173 16 H 0.106 0.894 17 C -0.093 4.093 18 C -0.121 4.121 19 C -0.116 4.116 20 H 0.007 0.993 21 H 0.078 0.922 22 H 0.028 0.972 23 H 0.260 0.740 24 H 0.333 0.667 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 0.675 10.030 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.280 5.280 13 C -0.048 4.048 14 C -0.168 4.168 15 C -0.192 4.192 16 H 0.124 0.876 17 C -0.130 4.130 18 C -0.158 4.158 19 C -0.156 4.156 20 H 0.026 0.974 21 H 0.097 0.903 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.151 0.849 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.646 0.544 10.027 10.385 hybrid contribution 0.999 0.030 -1.208 1.568 sum 3.645 0.574 8.819 9.560 Atomic orbital electron populations 1.21706 0.97977 0.99061 0.99436 1.19050 0.92528 0.92680 0.84872 0.97600 1.21315 1.31466 1.12480 0.90641 0.92352 1.24909 0.95085 0.94987 0.98977 1.69906 1.36672 1.22820 1.23378 0.86541 0.79210 0.79343 0.82557 1.20642 1.21283 1.19968 1.60482 1.32487 1.29180 1.05893 1.22318 0.98335 0.94951 0.89239 1.23021 0.92471 1.00383 1.00943 1.23343 0.98886 0.99206 0.97761 0.87631 1.21925 0.95764 0.98399 0.96940 1.22632 0.97634 1.00205 0.95364 1.22412 0.96216 0.98105 0.98891 0.97356 0.90309 0.95330 0.92971 0.84851 0.89939 0.88343 0.91901 0.91959 0.91625 0.92041 0.90955 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.21 37.16 0.34 -2.82 16 2 C 0.22 5.56 2.49 -68.86 -0.17 5.39 16 3 H 0.01 0.18 6.84 -51.93 -0.36 -0.18 16 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.76 16 5 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.65 -14.39 6.59 -93.12 -0.61 -15.01 16 13 C 0.04 0.84 2.43 -130.48 -0.32 0.52 16 14 C -0.13 -2.22 9.25 -26.73 -0.25 -2.47 16 15 C -0.17 -2.72 6.94 -89.50 -0.62 -3.35 16 16 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 17 C -0.09 -1.22 6.63 -25.07 -0.17 -1.39 16 18 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 19 C -0.12 -2.02 5.83 -25.07 -0.15 -2.17 16 20 H 0.01 0.18 7.18 -51.93 -0.37 -0.20 16 21 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.33 7.27 8.27 -39.29 -0.32 6.95 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.10 1.74 8.02 -51.93 -0.42 1.32 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.40 7.64 -51.93 -0.40 1.00 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -28.41 257.39 -8.11 -36.52 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.10 Total: 4.47 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -1.89 Total: -21.25 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.01 Total: -40.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.41 -8.11 -36.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710353543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.798 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds