Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46955 * 2 1 4 4 C 1.50703 * 109.47090 * 239.99998 * 2 1 3 5 5 H 1.07991 * 120.00106 * 240.00008 * 4 2 1 6 6 C 1.37882 * 119.99696 * 59.99715 * 4 2 1 7 7 N 1.31512 * 120.00083 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99472 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47136 * 90.00719 * 8 6 4 10 10 H 1.48503 * 109.46768 * 210.00195 * 8 6 4 11 11 H 1.48496 * 109.47336 * 330.00197 * 8 6 4 12 12 N 1.46902 * 109.46951 * 120.00147 * 2 1 3 13 13 C 1.46896 * 110.99754 * 273.25614 * 12 2 1 14 14 C 1.53000 * 119.75445 * 90.16550 * 13 12 2 15 15 C 1.52998 * 60.37717 * 111.12242 * 14 13 12 16 16 H 1.09006 * 119.75514 * 248.87623 * 15 14 13 17 17 C 1.54272 * 118.20385 * 93.61889 * 15 14 13 18 18 C 1.54888 * 104.19120 * 272.20920 * 17 15 14 19 19 C 1.54274 * 117.41324 * 294.71022 * 13 12 2 20 20 H 1.08997 * 109.46930 * 299.99832 * 1 2 3 21 21 H 1.08997 * 109.47418 * 59.99950 * 1 2 3 22 22 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99813 * 179.97438 * 7 6 4 24 24 H 1.00902 * 110.99554 * 149.30255 * 12 2 1 25 25 H 1.09000 * 117.45634 * 218.71433 * 14 13 12 26 26 H 1.08996 * 117.46405 * 3.51995 * 14 13 12 27 27 H 1.09001 * 110.48661 * 153.52878 * 17 15 14 28 28 H 1.09005 * 110.48057 * 30.88740 * 17 15 14 29 29 H 1.08998 * 110.75468 * 279.62275 * 18 17 15 30 30 H 1.09007 * 110.75112 * 156.25275 * 18 17 15 31 31 H 1.09000 * 110.48472 * 2.31118 * 19 13 12 32 32 H 1.08995 * 110.48279 * 124.95487 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.1217 0.2321 2.3363 14 6 0.9253 0.4208 3.2713 15 6 2.1825 -0.2842 3.7846 16 1 2.1516 -1.3507 4.0079 17 6 3.2485 0.5626 4.5100 18 6 4.1609 1.0815 3.3711 19 6 3.1529 1.3748 2.2322 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7094 1.1618 -3.4844 24 1 2.9039 -1.1445 1.0204 25 1 0.7286 1.4280 3.6386 26 1 0.0434 -0.1933 3.0894 27 1 3.8186 -0.0548 5.2043 28 1 2.7814 1.3962 5.0345 29 1 4.8741 0.3150 3.0679 30 1 4.6769 1.9926 3.6742 31 1 3.6533 1.3500 1.2642 32 1 2.6704 2.3394 2.3888 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710353543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -3.123156 kcal Electronic energy + Delta-G solvation = -12614.160696 eV Core-core repulsion = 10573.987349 eV Total energy + Delta-G solvation = -2040.173347 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56609 -36.70446 -33.93006 -32.25672 -29.99560 -28.16159 -27.16697 -23.35219 -22.41986 -20.98643 -19.75096 -18.51667 -16.93784 -16.77668 -16.03884 -15.35836 -14.71425 -14.18552 -14.04542 -13.82613 -13.51463 -13.26194 -12.85645 -12.54504 -12.46709 -12.23321 -12.08656 -11.89237 -11.80433 -11.65666 -11.13735 -10.78591 -10.57668 -10.15176 -9.06934 -8.13806 -6.28480 1.40368 1.41344 1.51527 2.39845 2.79598 3.13965 3.44767 3.69573 3.96735 4.03504 4.36294 4.55632 4.63994 4.69908 4.76472 4.89440 4.90795 4.93876 5.00652 5.12447 5.21142 5.23730 5.27736 5.42650 5.51942 5.52796 5.69932 5.89604 6.21935 6.47418 6.82947 7.01636 7.41907 8.91530 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057246 B = 0.009395 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.997110 B = 2979.661464 C = 3160.618482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.224 3.776 3 H -0.026 1.026 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.651 5.651 13 C 0.004 3.996 14 C -0.133 4.133 15 C -0.146 4.146 16 H 0.109 0.891 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.115 4.115 20 H 0.023 0.977 21 H 0.054 0.946 22 H 0.022 0.978 23 H 0.262 0.738 24 H 0.331 0.669 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 0.298 11.303 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 H -0.008 1.008 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.280 5.280 13 C -0.089 4.089 14 C -0.171 4.171 15 C -0.164 4.164 16 H 0.127 0.873 17 C -0.123 4.123 18 C -0.150 4.150 19 C -0.155 4.155 20 H 0.042 0.958 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.485 0.165 11.324 11.849 hybrid contribution 0.720 0.165 -1.563 1.729 sum 4.205 0.329 9.761 10.633 Atomic orbital electron populations 1.21527 0.98017 0.98396 0.98979 1.18793 0.92406 0.91067 0.86160 1.00799 1.21644 1.31759 1.12672 0.91883 0.92520 1.25737 0.95182 0.95673 1.02021 1.70033 1.37470 1.23996 1.24133 0.85492 0.78853 0.78222 0.78666 1.20123 1.20770 1.19208 1.60358 1.32389 1.29831 1.05419 1.22554 1.00642 0.96093 0.89578 1.23092 0.92201 1.01407 1.00377 1.23494 0.98203 0.99843 0.94896 0.87274 1.21964 0.94807 0.98832 0.96691 1.22608 0.96962 1.01347 0.94102 1.22362 0.96639 0.97693 0.98814 0.95792 0.92684 0.95879 0.92843 0.85146 0.88319 0.89411 0.89382 0.90366 0.91668 0.89770 0.94131 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.21 71.98 0.66 -5.12 16 2 C 0.22 11.84 2.49 44.17 0.11 11.95 16 3 H -0.03 -1.49 6.84 -2.39 -0.02 -1.51 16 4 C -0.54 -30.62 8.59 25.60 0.22 -30.40 16 5 H 0.06 3.14 7.59 -2.92 -0.02 3.12 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 N -0.65 -29.12 6.59 -448.53 -2.96 -32.07 16 13 C 0.00 0.14 2.43 4.25 0.01 0.15 16 14 C -0.13 -4.33 9.25 30.59 0.28 -4.05 16 15 C -0.15 -4.22 6.94 -10.07 -0.07 -4.29 16 16 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 17 C -0.09 -1.93 6.63 31.67 0.21 -1.72 16 18 C -0.11 -2.86 6.91 31.88 0.22 -2.64 16 19 C -0.12 -3.96 5.83 31.67 0.18 -3.77 16 20 H 0.02 1.11 7.18 -2.39 -0.02 1.10 16 21 H 0.05 3.12 6.07 -2.39 -0.01 3.11 16 22 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 24 H 0.33 14.68 8.27 -89.69 -0.74 13.93 16 25 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.09 3.02 8.02 -2.39 -0.02 3.00 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.04 1.61 7.64 -2.39 -0.02 1.59 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.10 257.39 1.94 -59.16 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.35 Total: 19.04 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 2.28 Total: -38.69 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.71 Total: -85.78 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -61.10 1.94 -59.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710353543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.036 kcal (2) G-P(sol) polarization free energy of solvation -61.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds